Cluster: HRGMv2_0415_CGC78
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0415
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0415_88 | HRGMv2_0415_88_6 | 5500 | 8190 | - | GH2 |
| CAZyme | HRGMv2_0415_88 | HRGMv2_0415_88_7 | 8202 | 9314 | - | GH130_3 |
| pfam | HRGMv2_0415_88 | HRGMv2_0415_88_8 | 9408 | 10079 | - | DUF3823 | DUF3823_C |
| TC | HRGMv2_0415_88 | HRGMv2_0415_88_9 | 10126 | 11973 | - | 8.A.46.1.5 |
| TC | HRGMv2_0415_88 | HRGMv2_0415_88_10 | 11985 | 15368 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0415_88_6
Type: CAZyme
Location: 5500 - 8190 (-)
Type: CAZyme
Location: 5500 - 8190 (-)
Gene ID: HRGMv2_0415_88_7
Type: CAZyme
Location: 8202 - 9314 (-)
Type: CAZyme
Location: 8202 - 9314 (-)
Gene ID: HRGMv2_0415_88_8
Type: pfam
Location: 9408 - 10079 (-)
Type: pfam
Location: 9408 - 10079 (-)
Gene ID: HRGMv2_0415_88_9
Type: TC
Location: 10126 - 11973 (-)
Type: TC
Location: 10126 - 11973 (-)
Gene ID: HRGMv2_0415_88_10
Type: TC
Location: 11985 - 15368 (-)
Type: TC
Location: 11985 - 15368 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900760525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0415_88_8 | vegetarian > omnivore | 1.27207 | 0.00065 |
| HRGMv2_0415_88_9 | vegetarian > omnivore | 1.14071 | 0.00065 |