Cluster: HRGMv2_0415_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0415
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0415_3 | HRGMv2_0415_3_10 | 10844 | 13540 | - | GH2 |
| pfam | HRGMv2_0415_3 | HRGMv2_0415_3_11 | 13683 | 15062 | - | FAD_binding_2 | GIDA | FAD_oxidored | NAD_binding_8 |
| TC | HRGMv2_0415_3 | HRGMv2_0415_3_12 | 15074 | 16555 | - | 8.A.46.3.2 |
| TC | HRGMv2_0415_3 | HRGMv2_0415_3_13 | 16573 | 19884 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0415_3_10
Type: CAZyme
Location: 10844 - 13540 (-)
Type: CAZyme
Location: 10844 - 13540 (-)
Gene ID: HRGMv2_0415_3_11
Type: pfam
Location: 13683 - 15062 (-)
Type: pfam
Location: 13683 - 15062 (-)
Gene ID: HRGMv2_0415_3_12
Type: TC
Location: 15074 - 16555 (-)
Type: TC
Location: 15074 - 16555 (-)
Gene ID: HRGMv2_0415_3_13
Type: TC
Location: 16573 - 19884 (-)
Type: TC
Location: 16573 - 19884 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900760525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0415_3_10 | vegetarian > omnivore | 1.40852 | 0.00065 |
| HRGMv2_0415_3_11 | vegetarian > omnivore | 1.52859 | 0.00065 |
| HRGMv2_0415_3_11 | vegetarian > vegan | 1.04655 | 0.00241 |
| HRGMv2_0415_3_12 | vegetarian > omnivore | 1.82317 | 0.00065 |
| HRGMv2_0415_3_12 | vegetarian > vegan | 1.18208 | 0.00241 |
| HRGMv2_0415_3_13 | vegetarian > omnivore | 1.28131 | 0.00065 |