Cluster: HRGMv2_0415_CGC52
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0415
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0415_37 | HRGMv2_0415_37_3 | 1987 | 4977 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0415_37 | HRGMv2_0415_37_4 | 5002 | 6459 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0415_37 | HRGMv2_0415_37_5 | 6514 | 7740 | + | Sugar_tr | MFS_1 |
| CAZyme | HRGMv2_0415_37 | HRGMv2_0415_37_6 | 7770 | 9071 | + | GH10 |
| CAZyme | HRGMv2_0415_37 | HRGMv2_0415_37_7 | 9090 | 10640 | + | GH10 |
Gene ID: HRGMv2_0415_37_3
Type: TC
Location: 1987 - 4977 (+)
Type: TC
Location: 1987 - 4977 (+)
Gene ID: HRGMv2_0415_37_4
Type: pfam
Location: 5002 - 6459 (+)
Type: pfam
Location: 5002 - 6459 (+)
Gene ID: HRGMv2_0415_37_5
Type: pfam
Location: 6514 - 7740 (+)
Type: pfam
Location: 6514 - 7740 (+)
Gene ID: HRGMv2_0415_37_6
Type: CAZyme
Location: 7770 - 9071 (+)
Type: CAZyme
Location: 7770 - 9071 (+)
Gene ID: HRGMv2_0415_37_7
Type: CAZyme
Location: 9090 - 10640 (+)
Type: CAZyme
Location: 9090 - 10640 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900760525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0415_37_5 | vegetarian > omnivore | 2.79178 | 0.00065 |
| HRGMv2_0415_37_6 | vegetarian > omnivore | 2.96912 | 0.00065 |
| HRGMv2_0415_37_7 | vegetarian > omnivore | 4.66682 | 0.00065 |