Cluster: HRGMv2_0415_CGC50
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate: host glycan
- Genome ID: HRGMv2_0415
- CGC Family ID: CGCFAM_00649
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0415_32 | HRGMv2_0415_32_17 | 24114 | 26831 | + | PL40 |
| CAZyme | HRGMv2_0415_32 | HRGMv2_0415_32_18 | 26872 | 30069 | + | PL8_3 |
| CAZyme | HRGMv2_0415_32 | HRGMv2_0415_32_19 | 30086 | 31945 | + | PL35 |
| CAZyme | HRGMv2_0415_32 | HRGMv2_0415_32_20 | 31948 | 33147 | + | GH88 |
| TF | HRGMv2_0415_32 | HRGMv2_0415_32_21 | 33358 | 33903 | + | GerE |
| STP | HRGMv2_0415_32 | HRGMv2_0415_32_22 | 34141 | 35079 | + | FecR |
| TC | HRGMv2_0415_32 | HRGMv2_0415_32_23 | 35234 | 38797 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0415_32 | HRGMv2_0415_32_24 | 38823 | 40532 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0415_32 | HRGMv2_0415_32_25 | 40551 | 41768 | + | Glyco_tran_WbsX |
| CAZyme | HRGMv2_0415_32 | HRGMv2_0415_32_26 | 42146 | 43744 | + | GH20 |
Gene ID: HRGMv2_0415_32_17
Type: CAZyme
Location: 24114 - 26831 (+)
Type: CAZyme
Location: 24114 - 26831 (+)
Gene ID: HRGMv2_0415_32_18
Type: CAZyme
Location: 26872 - 30069 (+)
Type: CAZyme
Location: 26872 - 30069 (+)
Gene ID: HRGMv2_0415_32_19
Type: CAZyme
Location: 30086 - 31945 (+)
Type: CAZyme
Location: 30086 - 31945 (+)
Gene ID: HRGMv2_0415_32_20
Type: CAZyme
Location: 31948 - 33147 (+)
Type: CAZyme
Location: 31948 - 33147 (+)
Gene ID: HRGMv2_0415_32_21
Type: TF
Location: 33358 - 33903 (+)
Type: TF
Location: 33358 - 33903 (+)
Gene ID: HRGMv2_0415_32_22
Type: STP
Location: 34141 - 35079 (+)
Type: STP
Location: 34141 - 35079 (+)
Gene ID: HRGMv2_0415_32_23
Type: TC
Location: 35234 - 38797 (+)
Type: TC
Location: 35234 - 38797 (+)
Gene ID: HRGMv2_0415_32_24
Type: pfam
Location: 38823 - 40532 (+)
Type: pfam
Location: 38823 - 40532 (+)
Gene ID: HRGMv2_0415_32_25
Type: pfam
Location: 40551 - 41768 (+)
Type: pfam
Location: 40551 - 41768 (+)
Gene ID: HRGMv2_0415_32_26
Type: CAZyme
Location: 42146 - 43744 (+)
Type: CAZyme
Location: 42146 - 43744 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900760525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0415_32_23 | vegetarian > omnivore | 1.55115 | 0.00065 |
| HRGMv2_0415_32_23 | vegetarian > vegan | 1.50563 | 0.00241 |
| HRGMv2_0415_32_24 | vegetarian > omnivore | 2.02727 | 0.00065 |
| HRGMv2_0415_32_24 | vegetarian > vegan | 1.08424 | 0.00241 |
| HRGMv2_0415_32_25 | vegetarian > omnivore | 1.90457 | 0.00065 |
| HRGMv2_0415_32_25 | vegetarian > vegan | 1.48548 | 0.00241 |