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Cluster: HRGMv2_0415_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0415_2 HRGMv2_0415_2_24 28787 29785 + GH43_34
STP HRGMv2_0415_2 HRGMv2_0415_2_25 29908 30552 + TetR_N
pfam HRGMv2_0415_2 HRGMv2_0415_2_26 30570 31889 + OEP | OEP
TC HRGMv2_0415_2 HRGMv2_0415_2_27 32078 32971 + 3.A.1.105.16
TC HRGMv2_0415_2 HRGMv2_0415_2_28 33092 34018 + 3.A.1.105.6
TC HRGMv2_0415_2 HRGMv2_0415_2_29 34226 34969 + 3.A.1.105.15
pfam HRGMv2_0415_2 HRGMv2_0415_2_30 34996 35349 + 23S_rRNA_IVP
TC HRGMv2_0415_2 HRGMv2_0415_2_31 35346 36452 + 3.A.1.105.4
TC HRGMv2_0415_2 HRGMv2_0415_2_32 36452 37549 + 3.A.1.105.4
Gene ID: HRGMv2_0415_2_24
Type: CAZyme
Location: 28787 - 29785 (+)
Gene ID: HRGMv2_0415_2_25
Type: STP
Location: 29908 - 30552 (+)
Gene ID: HRGMv2_0415_2_26
Type: pfam
Location: 30570 - 31889 (+)
Gene ID: HRGMv2_0415_2_27
Type: TC
Location: 32078 - 32971 (+)
Gene ID: HRGMv2_0415_2_28
Type: TC
Location: 33092 - 34018 (+)
Gene ID: HRGMv2_0415_2_29
Type: TC
Location: 34226 - 34969 (+)
Gene ID: HRGMv2_0415_2_30
Type: pfam
Location: 34996 - 35349 (+)
Gene ID: HRGMv2_0415_2_31
Type: TC
Location: 35346 - 36452 (+)
Gene ID: HRGMv2_0415_2_32
Type: TC
Location: 36452 - 37549 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0415_2_27 vegetarian > vegan 1.29750 0.00241

🧭 Explore Read Mapping of CGC

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