Cluster: HRGMv2_0415_CGC26
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0415
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0415_12 | HRGMv2_0415_12_4 | 3066 | 4385 | - | 2.A.1.7.9 |
| CAZyme | HRGMv2_0415_12 | HRGMv2_0415_12_5 | 4382 | 5722 | - | GH177 |
| CAZyme | HRGMv2_0415_12 | HRGMv2_0415_12_6 | 5771 | 6964 | - | CE9 |
| TF | HRGMv2_0415_12 | HRGMv2_0415_12_7 | 7062 | 8219 | - | HTH_AraC |
| pfam | HRGMv2_0415_12 | HRGMv2_0415_12_8 | 8212 | 9531 | - | OEP | OEP |
| TC | HRGMv2_0415_12 | HRGMv2_0415_12_9 | 9617 | 12658 | - | 2.A.6.2.33 |
| TC | HRGMv2_0415_12 | HRGMv2_0415_12_10 | 12667 | 13764 | - | 2.A.6.2.28 |
| CAZyme | HRGMv2_0415_12 | HRGMv2_0415_12_11 | 13953 | 16007 | - | GH29 |
| pfam | HRGMv2_0415_12 | HRGMv2_0415_12_12 | 16167 | 17663 | - | PD40 | PD40 |
| pfam | HRGMv2_0415_12 | HRGMv2_0415_12_13 | 17660 | 19420 | - | DUF6057 |
| TC | HRGMv2_0415_12 | HRGMv2_0415_12_14 | 19497 | 21248 | - | 8.A.46.1.6 |
| TC | HRGMv2_0415_12 | HRGMv2_0415_12_15 | 21268 | 24564 | - | 1.B.14.6.1 |
| STP | HRGMv2_0415_12 | HRGMv2_0415_12_16 | 25462 | 26046 | + | Sigma70_r2 | Sigma70_r4_2 |
| STP | HRGMv2_0415_12 | HRGMv2_0415_12_17 | 26125 | 27336 | + | FecR |
| TC | HRGMv2_0415_12 | HRGMv2_0415_12_18 | 27453 | 30818 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0415_12 | HRGMv2_0415_12_19 | 30839 | 32311 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0415_12 | HRGMv2_0415_12_20 | 32529 | 35300 | + | GH2 |
| TC | HRGMv2_0415_12 | HRGMv2_0415_12_21 | 35579 | 38779 | + | 1.B.14.6.1 |
| TC | HRGMv2_0415_12 | HRGMv2_0415_12_22 | 38794 | 40278 | + | 8.A.46.1.3 |
| CAZyme | HRGMv2_0415_12 | HRGMv2_0415_12_23 | 40458 | 42743 | + | GH92 |
Gene ID: HRGMv2_0415_12_4
Type: TC
Location: 3066 - 4385 (-)
Type: TC
Location: 3066 - 4385 (-)
Gene ID: HRGMv2_0415_12_5
Type: CAZyme
Location: 4382 - 5722 (-)
Type: CAZyme
Location: 4382 - 5722 (-)
Gene ID: HRGMv2_0415_12_6
Type: CAZyme
Location: 5771 - 6964 (-)
Type: CAZyme
Location: 5771 - 6964 (-)
Gene ID: HRGMv2_0415_12_7
Type: TF
Location: 7062 - 8219 (-)
Type: TF
Location: 7062 - 8219 (-)
Gene ID: HRGMv2_0415_12_8
Type: pfam
Location: 8212 - 9531 (-)
Type: pfam
Location: 8212 - 9531 (-)
Gene ID: HRGMv2_0415_12_9
Type: TC
Location: 9617 - 12658 (-)
Type: TC
Location: 9617 - 12658 (-)
Gene ID: HRGMv2_0415_12_10
Type: TC
Location: 12667 - 13764 (-)
Type: TC
Location: 12667 - 13764 (-)
Gene ID: HRGMv2_0415_12_11
Type: CAZyme
Location: 13953 - 16007 (-)
Type: CAZyme
Location: 13953 - 16007 (-)
Gene ID: HRGMv2_0415_12_12
Type: pfam
Location: 16167 - 17663 (-)
Type: pfam
Location: 16167 - 17663 (-)
Gene ID: HRGMv2_0415_12_13
Type: pfam
Location: 17660 - 19420 (-)
Type: pfam
Location: 17660 - 19420 (-)
Gene ID: HRGMv2_0415_12_14
Type: TC
Location: 19497 - 21248 (-)
Type: TC
Location: 19497 - 21248 (-)
Gene ID: HRGMv2_0415_12_15
Type: TC
Location: 21268 - 24564 (-)
Type: TC
Location: 21268 - 24564 (-)
Gene ID: HRGMv2_0415_12_16
Type: STP
Location: 25462 - 26046 (+)
Type: STP
Location: 25462 - 26046 (+)
Gene ID: HRGMv2_0415_12_17
Type: STP
Location: 26125 - 27336 (+)
Type: STP
Location: 26125 - 27336 (+)
Gene ID: HRGMv2_0415_12_18
Type: TC
Location: 27453 - 30818 (+)
Type: TC
Location: 27453 - 30818 (+)
Gene ID: HRGMv2_0415_12_19
Type: pfam
Location: 30839 - 32311 (+)
Type: pfam
Location: 30839 - 32311 (+)
Gene ID: HRGMv2_0415_12_20
Type: CAZyme
Location: 32529 - 35300 (+)
Type: CAZyme
Location: 32529 - 35300 (+)
Gene ID: HRGMv2_0415_12_21
Type: TC
Location: 35579 - 38779 (+)
Type: TC
Location: 35579 - 38779 (+)
Gene ID: HRGMv2_0415_12_22
Type: TC
Location: 38794 - 40278 (+)
Type: TC
Location: 38794 - 40278 (+)
Gene ID: HRGMv2_0415_12_23
Type: CAZyme
Location: 40458 - 42743 (+)
Type: CAZyme
Location: 40458 - 42743 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900760525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0415_12_16 | vegetarian > omnivore | 2.10575 | 0.00065 |
| HRGMv2_0415_12_16 | vegetarian > vegan | 1.97311 | 0.00102 |
| HRGMv2_0415_12_17 | vegetarian > omnivore | 1.61733 | 0.00065 |
| HRGMv2_0415_12_17 | vegetarian > vegan | 1.21789 | 0.00241 |
| HRGMv2_0415_12_18 | vegetarian > omnivore | 1.08628 | 0.00065 |
| HRGMv2_0415_12_18 | vegetarian > vegan | 1.61078 | 0.00241 |
| HRGMv2_0415_12_19 | vegetarian > omnivore | 1.46778 | 0.00065 |
| HRGMv2_0415_12_19 | vegetarian > vegan | 1.76060 | 0.00241 |
| HRGMv2_0415_12_22 | vegetarian > omnivore | 1.01152 | 0.00065 |