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Cluster: HRGMv2_0415_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0415_10 HRGMv2_0415_10_40 45243 48305 - 1.B.14.6.1
TC HRGMv2_0415_10 HRGMv2_0415_10_41 49384 52500 + 1.B.14.6.1
pfam HRGMv2_0415_10 HRGMv2_0415_10_42 52540 54153 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0415_10 HRGMv2_0415_10_43 54248 57163 + GH2
CAZyme HRGMv2_0415_10 HRGMv2_0415_10_44 57218 58240 + GH159
sulfatase HRGMv2_0415_10 HRGMv2_0415_10_45 58264 59649 + S1_19
TC HRGMv2_0415_10 HRGMv2_0415_10_46 59727 61676 + 3.A.1.121.4
CAZyme HRGMv2_0415_10 HRGMv2_0415_10_47 61854 63020 + CE9
CAZyme HRGMv2_0415_10 HRGMv2_0415_10_48 63024 64184 + CE9
Gene ID: HRGMv2_0415_10_40
Type: TC
Location: 45243 - 48305 (-)
Gene ID: HRGMv2_0415_10_41
Type: TC
Location: 49384 - 52500 (+)
Gene ID: HRGMv2_0415_10_42
Type: pfam
Location: 52540 - 54153 (+)
Gene ID: HRGMv2_0415_10_43
Type: CAZyme
Location: 54248 - 57163 (+)
Gene ID: HRGMv2_0415_10_44
Type: CAZyme
Location: 57218 - 58240 (+)
Gene ID: HRGMv2_0415_10_45
Type: sulfatase
Location: 58264 - 59649 (+)
Gene ID: HRGMv2_0415_10_46
Type: TC
Location: 59727 - 61676 (+)
Gene ID: HRGMv2_0415_10_47
Type: CAZyme
Location: 61854 - 63020 (+)
Gene ID: HRGMv2_0415_10_48
Type: CAZyme
Location: 63024 - 64184 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0415_10_41 vegetarian > vegan 1.12218 0.00241

🧭 Explore Read Mapping of CGC

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