Cluster: HRGMv2_0415_CGC2
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_0415
- CGC Family ID: CGCFAM_07637
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0415_1 | HRGMv2_0415_1_47 | 51624 | 52982 | + | 9.B.145.1.2 |
| peptidase | HRGMv2_0415_1 | HRGMv2_0415_1_48 | 52993 | 55134 | + | S46.001 |
| sulfatase | HRGMv2_0415_1 | HRGMv2_0415_1_49 | 55474 | 57048 | + | S1_11 |
| CAZyme | HRGMv2_0415_1 | HRGMv2_0415_1_50 | 57081 | 59249 | + | GH31_14 |
| TF | HRGMv2_0415_1 | HRGMv2_0415_1_51 | 59250 | 60137 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_0415_1 | HRGMv2_0415_1_52 | 60305 | 61678 | + | 2.A.1.1.3 |
| STP | HRGMv2_0415_1 | HRGMv2_0415_1_53 | 61688 | 64987 | + | TPR_2 |
| CAZyme | HRGMv2_0415_1 | HRGMv2_0415_1_54 | 65037 | 67847 | + | GH2 |
| CAZyme | HRGMv2_0415_1 | HRGMv2_0415_1_55 | 67884 | 70643 | + | GH2 |
| CAZyme | HRGMv2_0415_1 | HRGMv2_0415_1_56 | 70690 | 72978 | + | GH95 |
| CAZyme | HRGMv2_0415_1 | HRGMv2_0415_1_57 | 73292 | 75439 | - | GH29 |
| pfam | HRGMv2_0415_1 | HRGMv2_0415_1_58 | 75452 | 77083 | - | CARDB |
| CAZyme | HRGMv2_0415_1 | HRGMv2_0415_1_59 | 77156 | 79909 | - | GH2 |
| TF | HRGMv2_0415_1 | HRGMv2_0415_1_60 | 80064 | 80963 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0415_1 | HRGMv2_0415_1_61 | 81114 | 82964 | + | GH120 |
| CAZyme | HRGMv2_0415_1 | HRGMv2_0415_1_62 | 83121 | 86534 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_0415_1 | HRGMv2_0415_1_63 | 86707 | 86901 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0415_1 | HRGMv2_0415_1_64 | 86912 | 90037 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_0415_1_47
Type: TC
Location: 51624 - 52982 (+)
Type: TC
Location: 51624 - 52982 (+)
Gene ID: HRGMv2_0415_1_48
Type: peptidase
Location: 52993 - 55134 (+)
Type: peptidase
Location: 52993 - 55134 (+)
Gene ID: HRGMv2_0415_1_49
Type: sulfatase
Location: 55474 - 57048 (+)
Type: sulfatase
Location: 55474 - 57048 (+)
Gene ID: HRGMv2_0415_1_50
Type: CAZyme
Location: 57081 - 59249 (+)
Type: CAZyme
Location: 57081 - 59249 (+)
Gene ID: HRGMv2_0415_1_51
Type: TF
Location: 59250 - 60137 (-)
Type: TF
Location: 59250 - 60137 (-)
Gene ID: HRGMv2_0415_1_52
Type: TC
Location: 60305 - 61678 (+)
Type: TC
Location: 60305 - 61678 (+)
Gene ID: HRGMv2_0415_1_53
Type: STP
Location: 61688 - 64987 (+)
Type: STP
Location: 61688 - 64987 (+)
Gene ID: HRGMv2_0415_1_54
Type: CAZyme
Location: 65037 - 67847 (+)
Type: CAZyme
Location: 65037 - 67847 (+)
Gene ID: HRGMv2_0415_1_55
Type: CAZyme
Location: 67884 - 70643 (+)
Type: CAZyme
Location: 67884 - 70643 (+)
Gene ID: HRGMv2_0415_1_56
Type: CAZyme
Location: 70690 - 72978 (+)
Type: CAZyme
Location: 70690 - 72978 (+)
Gene ID: HRGMv2_0415_1_57
Type: CAZyme
Location: 73292 - 75439 (-)
Type: CAZyme
Location: 73292 - 75439 (-)
Gene ID: HRGMv2_0415_1_58
Type: pfam
Location: 75452 - 77083 (-)
Type: pfam
Location: 75452 - 77083 (-)
Gene ID: HRGMv2_0415_1_59
Type: CAZyme
Location: 77156 - 79909 (-)
Type: CAZyme
Location: 77156 - 79909 (-)
Gene ID: HRGMv2_0415_1_60
Type: TF
Location: 80064 - 80963 (-)
Type: TF
Location: 80064 - 80963 (-)
Gene ID: HRGMv2_0415_1_61
Type: CAZyme
Location: 81114 - 82964 (+)
Type: CAZyme
Location: 81114 - 82964 (+)
Gene ID: HRGMv2_0415_1_62
Type: CAZyme
Location: 83121 - 86534 (+)
Type: CAZyme
Location: 83121 - 86534 (+)
Gene ID: HRGMv2_0415_1_63
Type:
Location: 86707 - 86901 (+)
Type:
Location: 86707 - 86901 (+)
Gene ID: HRGMv2_0415_1_64
Type: TC
Location: 86912 - 90037 (+)
Type: TC
Location: 86912 - 90037 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900760525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.