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Cluster: HRGMv2_0415_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0415_7 HRGMv2_0415_7_57 62377 64983 + GH3
pfam HRGMv2_0415_7 HRGMv2_0415_7_58 65061 66035 - PMI_typeI_cat | MPI_cupin_dom
CAZyme HRGMv2_0415_7 HRGMv2_0415_7_59 66133 68142 - GH13_8
TC HRGMv2_0415_7 HRGMv2_0415_7_60 69170 71491 + 2.A.37.4.2
CAZyme HRGMv2_0415_7 HRGMv2_0415_7_61 71608 73725 - GH2
TF HRGMv2_0415_7 HRGMv2_0415_7_62 73924 77928 + HTH_AraC
TC HRGMv2_0415_7 HRGMv2_0415_7_63 78095 81178 + 1.B.14.6.1
TC HRGMv2_0415_7 HRGMv2_0415_7_64 81199 82797 + 8.A.46.1.6
CAZyme HRGMv2_0415_7 HRGMv2_0415_7_65 82994 84157 + GH105
TC HRGMv2_0415_7 HRGMv2_0415_7_66 84250 87567 + 9.A.25.1.1
Gene ID: HRGMv2_0415_7_57
Type: CAZyme
Location: 62377 - 64983 (+)
Gene ID: HRGMv2_0415_7_58
Type: pfam
Location: 65061 - 66035 (-)
Gene ID: HRGMv2_0415_7_59
Type: CAZyme
Location: 66133 - 68142 (-)
Gene ID: HRGMv2_0415_7_60
Type: TC
Location: 69170 - 71491 (+)
Gene ID: HRGMv2_0415_7_61
Type: CAZyme
Location: 71608 - 73725 (-)
Gene ID: HRGMv2_0415_7_62
Type: TF
Location: 73924 - 77928 (+)
Gene ID: HRGMv2_0415_7_63
Type: TC
Location: 78095 - 81178 (+)
Gene ID: HRGMv2_0415_7_64
Type: TC
Location: 81199 - 82797 (+)
Gene ID: HRGMv2_0415_7_65
Type: CAZyme
Location: 82994 - 84157 (+)
Gene ID: HRGMv2_0415_7_66
Type: TC
Location: 84250 - 87567 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0415_7_64 vegetarian > vegan 1.03677 0.00241

🧭 Explore Read Mapping of CGC

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