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Cluster: HRGMv2_0413_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0413_4 HRGMv2_0413_4_20 31422 34700 + 1.B.14.6.1
pfam HRGMv2_0413_4 HRGMv2_0413_4_21 34719 36776 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) HRGMv2_0413_4 HRGMv2_0413_4_22 37037 37885 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0413_4 HRGMv2_0413_4_23 37960 39627 + GH16_3
CAZyme HRGMv2_0413_4 HRGMv2_0413_4_24 39630 40667 + GH43_24
CAZyme HRGMv2_0413_4 HRGMv2_0413_4_25 40847 41971 + GH43_24
CAZyme HRGMv2_0413_4 HRGMv2_0413_4_26 42007 44322 + GH105 | GH154
CAZyme HRGMv2_0413_4 HRGMv2_0413_4_27 44443 46827 + GH35
CAZyme HRGMv2_0413_4 HRGMv2_0413_4_28 46844 48121 + PL42
sulfatase HRGMv2_0413_4 HRGMv2_0413_4_29 48146 48937 + S1_2
TC HRGMv2_0413_4 HRGMv2_0413_4_30 49186 50607 + 4.A.5.1.4
Gene ID: HRGMv2_0413_4_20
Type: TC
Location: 31422 - 34700 (+)
Gene ID: HRGMv2_0413_4_21
Type: pfam
Location: 34719 - 36776 (+)
Gene ID: HRGMv2_0413_4_22
Type:
Location: 37037 - 37885 (+)
Gene ID: HRGMv2_0413_4_23
Type: CAZyme
Location: 37960 - 39627 (+)
Gene ID: HRGMv2_0413_4_24
Type: CAZyme
Location: 39630 - 40667 (+)
Gene ID: HRGMv2_0413_4_25
Type: CAZyme
Location: 40847 - 41971 (+)
Gene ID: HRGMv2_0413_4_26
Type: CAZyme
Location: 42007 - 44322 (+)
Gene ID: HRGMv2_0413_4_27
Type: CAZyme
Location: 44443 - 46827 (+)
Gene ID: HRGMv2_0413_4_28
Type: CAZyme
Location: 46844 - 48121 (+)
Gene ID: HRGMv2_0413_4_29
Type: sulfatase
Location: 48146 - 48937 (+)
Gene ID: HRGMv2_0413_4_30
Type: TC
Location: 49186 - 50607 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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