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Cluster: HRGMv2_0409_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0409_26 HRGMv2_0409_26_15 15585 16262 + 9.B.186.1.3
pfam HRGMv2_0409_26 HRGMv2_0409_26_16 16347 16862 - C_GCAxxG_C_C
pfam HRGMv2_0409_26 HRGMv2_0409_26_17 16880 17542 - UDG
CAZyme HRGMv2_0409_26 HRGMv2_0409_26_18 17892 19604 - PL1_2
TC HRGMv2_0409_26 HRGMv2_0409_26_19 19679 21121 - 2.A.1.14.25
CAZyme HRGMv2_0409_26 HRGMv2_0409_26_20 21338 22555 + GH105
CAZyme HRGMv2_0409_26 HRGMv2_0409_26_21 22603 24048 + PL1_2
CAZyme HRGMv2_0409_26 HRGMv2_0409_26_22 24120 24914 + CE8
Gene ID: HRGMv2_0409_26_15
Type: TC
Location: 15585 - 16262 (+)
Gene ID: HRGMv2_0409_26_16
Type: pfam
Location: 16347 - 16862 (-)
Gene ID: HRGMv2_0409_26_17
Type: pfam
Location: 16880 - 17542 (-)
Gene ID: HRGMv2_0409_26_18
Type: CAZyme
Location: 17892 - 19604 (-)
Gene ID: HRGMv2_0409_26_19
Type: TC
Location: 19679 - 21121 (-)
Gene ID: HRGMv2_0409_26_20
Type: CAZyme
Location: 21338 - 22555 (+)
Gene ID: HRGMv2_0409_26_21
Type: CAZyme
Location: 22603 - 24048 (+)
Gene ID: HRGMv2_0409_26_22
Type: CAZyme
Location: 24120 - 24914 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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