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Cluster: HRGMv2_0409_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0409_23 HRGMv2_0409_23_18 22403 24262 - GH13_46
TC HRGMv2_0409_23 HRGMv2_0409_23_19 24320 25684 - 2.A.2.6.2
TF HRGMv2_0409_23 HRGMv2_0409_23_20 25736 26710 - LacI
TC HRGMv2_0409_23 HRGMv2_0409_23_21 27009 29945 + 1.B.14.6.1
TC HRGMv2_0409_23 HRGMv2_0409_23_22 29970 31493 + 8.A.46.1.1
pfam HRGMv2_0409_23 HRGMv2_0409_23_23 31643 32716 + SusE | SusF_SusE
NULL(UNKNOWN) HRGMv2_0409_23 HRGMv2_0409_23_24 32790 33611 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0409_23 HRGMv2_0409_23_25 33834 36584 + GH13_10
Gene ID: HRGMv2_0409_23_18
Type: CAZyme
Location: 22403 - 24262 (-)
Gene ID: HRGMv2_0409_23_19
Type: TC
Location: 24320 - 25684 (-)
Gene ID: HRGMv2_0409_23_20
Type: TF
Location: 25736 - 26710 (-)
Gene ID: HRGMv2_0409_23_21
Type: TC
Location: 27009 - 29945 (+)
Gene ID: HRGMv2_0409_23_22
Type: TC
Location: 29970 - 31493 (+)
Gene ID: HRGMv2_0409_23_23
Type: pfam
Location: 31643 - 32716 (+)
Gene ID: HRGMv2_0409_23_24
Type:
Location: 32790 - 33611 (+)
Gene ID: HRGMv2_0409_23_25
Type: CAZyme
Location: 33834 - 36584 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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