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Cluster: HRGMv2_0409_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0409_11 HRGMv2_0409_11_48 53677 55245 - 3.D.10.1.4
CAZyme HRGMv2_0409_11 HRGMv2_0409_11_49 55484 56641 + GT4
CAZyme HRGMv2_0409_11 HRGMv2_0409_11_50 56688 57875 - GT4
CAZyme HRGMv2_0409_11 HRGMv2_0409_11_51 58021 59064 + GT4
pfam HRGMv2_0409_11 HRGMv2_0409_11_52 59200 59958 + Kdo
CAZyme HRGMv2_0409_11 HRGMv2_0409_11_53 59927 60856 - GT2
pfam HRGMv2_0409_11 HRGMv2_0409_11_54 60899 61618 - DNA_alkylation
TC HRGMv2_0409_11 HRGMv2_0409_11_55 61936 63168 + 9.B.156.3.1
pfam HRGMv2_0409_11 HRGMv2_0409_11_56 63231 63650 + YbeY
TC HRGMv2_0409_11 HRGMv2_0409_11_57 63721 65595 + 1.C.39.4.5
Gene ID: HRGMv2_0409_11_48
Type: TC
Location: 53677 - 55245 (-)
Gene ID: HRGMv2_0409_11_49
Type: CAZyme
Location: 55484 - 56641 (+)
Gene ID: HRGMv2_0409_11_50
Type: CAZyme
Location: 56688 - 57875 (-)
Gene ID: HRGMv2_0409_11_51
Type: CAZyme
Location: 58021 - 59064 (+)
Gene ID: HRGMv2_0409_11_52
Type: pfam
Location: 59200 - 59958 (+)
Gene ID: HRGMv2_0409_11_53
Type: CAZyme
Location: 59927 - 60856 (-)
Gene ID: HRGMv2_0409_11_54
Type: pfam
Location: 60899 - 61618 (-)
Gene ID: HRGMv2_0409_11_55
Type: TC
Location: 61936 - 63168 (+)
Gene ID: HRGMv2_0409_11_56
Type: pfam
Location: 63231 - 63650 (+)
Gene ID: HRGMv2_0409_11_57
Type: TC
Location: 63721 - 65595 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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