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Cluster: HRGMv2_0409_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0409_6 HRGMv2_0409_6_12 14258 17077 - GH2
pfam HRGMv2_0409_6 HRGMv2_0409_6_13 17148 18083 + RsgA_GTPase | RsgA_N
TC HRGMv2_0409_6 HRGMv2_0409_6_14 18621 20282 - 4.C.1.1.4
pfam HRGMv2_0409_6 HRGMv2_0409_6_15 20444 21772 + UPF0004 | Radical_SAM
pfam HRGMv2_0409_6 HRGMv2_0409_6_16 21769 22671 + Lip_A_acyltrans
CAZyme HRGMv2_0409_6 HRGMv2_0409_6_17 22678 23685 + GT2
STP HRGMv2_0409_6 HRGMv2_0409_6_18 23848 25122 + PALP
CAZyme HRGMv2_0409_6 HRGMv2_0409_6_19 25128 26033 - GH73
Gene ID: HRGMv2_0409_6_12
Type: CAZyme
Location: 14258 - 17077 (-)
Gene ID: HRGMv2_0409_6_13
Type: pfam
Location: 17148 - 18083 (+)
Gene ID: HRGMv2_0409_6_14
Type: TC
Location: 18621 - 20282 (-)
Gene ID: HRGMv2_0409_6_15
Type: pfam
Location: 20444 - 21772 (+)
Gene ID: HRGMv2_0409_6_16
Type: pfam
Location: 21769 - 22671 (+)
Gene ID: HRGMv2_0409_6_17
Type: CAZyme
Location: 22678 - 23685 (+)
Gene ID: HRGMv2_0409_6_18
Type: STP
Location: 23848 - 25122 (+)
Gene ID: HRGMv2_0409_6_19
Type: CAZyme
Location: 25128 - 26033 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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