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Cluster: HRGMv2_0399_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0399_27 HRGMv2_0399_27_25 29285 31180 - 1.B.14.10.1
NULL(UNKNOWN) HRGMv2_0399_27 HRGMv2_0399_27_26 31249 31464 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0399_27 HRGMv2_0399_27_27 31500 32729 - GH28
CAZyme HRGMv2_0399_27 HRGMv2_0399_27_28 32731 34842 - GH2
TC HRGMv2_0399_27 HRGMv2_0399_27_29 35703 36737 + 9.A.40.2.4
pfam HRGMv2_0399_27 HRGMv2_0399_27_30 36812 37975 - GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg
TC HRGMv2_0399_27 HRGMv2_0399_27_31 38020 39255 - 2.A.1.7.2
Gene ID: HRGMv2_0399_27_25
Type: TC
Location: 29285 - 31180 (-)
Gene ID: HRGMv2_0399_27_26
Type:
Location: 31249 - 31464 (-)
Gene ID: HRGMv2_0399_27_27
Type: CAZyme
Location: 31500 - 32729 (-)
Gene ID: HRGMv2_0399_27_28
Type: CAZyme
Location: 32731 - 34842 (-)
Gene ID: HRGMv2_0399_27_29
Type: TC
Location: 35703 - 36737 (+)
Gene ID: HRGMv2_0399_27_30
Type: pfam
Location: 36812 - 37975 (-)
Gene ID: HRGMv2_0399_27_31
Type: TC
Location: 38020 - 39255 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0399_27_30 vegan > omnivore 1.18416 0.04449

🧭 Explore Read Mapping of CGC

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