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Cluster: HRGMv2_0399_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0399_15 HRGMv2_0399_15_29 44401 52143 + 9.A.25.1.1
NULL(UNKNOWN) HRGMv2_0399_15 HRGMv2_0399_15_30 52434 52625 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0399_15 HRGMv2_0399_15_31 52962 54383 + GH28
CAZyme HRGMv2_0399_15 HRGMv2_0399_15_32 54543 56876 - GH35
CAZyme HRGMv2_0399_15 HRGMv2_0399_15_33 56939 58795 - PL33_1
CAZyme HRGMv2_0399_15 HRGMv2_0399_15_34 58840 60096 - GH154
CAZyme HRGMv2_0399_15 HRGMv2_0399_15_35 60135 62168 - GH127
TC HRGMv2_0399_15 HRGMv2_0399_15_36 63065 64075 + 2.A.115.1.2
pfam HRGMv2_0399_15 HRGMv2_0399_15_37 64236 65084 - CTP_transf_1
TC HRGMv2_0399_15 HRGMv2_0399_15_38 65154 67229 - 3.A.16.1.1
Gene ID: HRGMv2_0399_15_29
Type: TC
Location: 44401 - 52143 (+)
Gene ID: HRGMv2_0399_15_30
Type:
Location: 52434 - 52625 (+)
Gene ID: HRGMv2_0399_15_31
Type: CAZyme
Location: 52962 - 54383 (+)
Gene ID: HRGMv2_0399_15_32
Type: CAZyme
Location: 54543 - 56876 (-)
Gene ID: HRGMv2_0399_15_33
Type: CAZyme
Location: 56939 - 58795 (-)
Gene ID: HRGMv2_0399_15_34
Type: CAZyme
Location: 58840 - 60096 (-)
Gene ID: HRGMv2_0399_15_35
Type: CAZyme
Location: 60135 - 62168 (-)
Gene ID: HRGMv2_0399_15_36
Type: TC
Location: 63065 - 64075 (+)
Gene ID: HRGMv2_0399_15_37
Type: pfam
Location: 64236 - 65084 (-)
Gene ID: HRGMv2_0399_15_38
Type: TC
Location: 65154 - 67229 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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