dbCAN Logo

Cluster: HRGMv2_0397_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0397_2 HRGMv2_0397_2_42 54431 55399 - 3.A.5.1.1
STP HRGMv2_0397_2 HRGMv2_0397_2_43 55526 56071 - Sigma70_r2 | Sigma70_r4_2
pfam HRGMv2_0397_2 HRGMv2_0397_2_44 56319 58802 + MutS_V | Smr | MSSS
CAZyme HRGMv2_0397_2 HRGMv2_0397_2_45 58836 60173 + GH28
pfam HRGMv2_0397_2 HRGMv2_0397_2_46 60364 60975 + PRK
TC HRGMv2_0397_2 HRGMv2_0397_2_47 61014 61889 + 1.B.42.1.2
peptidase HRGMv2_0397_2 HRGMv2_0397_2_48 61928 62857 + M48.UPC
pfam HRGMv2_0397_2 HRGMv2_0397_2_49 62864 64810 + CN_hydrolase | NAD_synthase
TC HRGMv2_0397_2 HRGMv2_0397_2_50 64818 66254 + 2.A.50.2.1
Gene ID: HRGMv2_0397_2_42
Type: TC
Location: 54431 - 55399 (-)
Gene ID: HRGMv2_0397_2_43
Type: STP
Location: 55526 - 56071 (-)
Gene ID: HRGMv2_0397_2_44
Type: pfam
Location: 56319 - 58802 (+)
Gene ID: HRGMv2_0397_2_45
Type: CAZyme
Location: 58836 - 60173 (+)
Gene ID: HRGMv2_0397_2_46
Type: pfam
Location: 60364 - 60975 (+)
Gene ID: HRGMv2_0397_2_47
Type: TC
Location: 61014 - 61889 (+)
Gene ID: HRGMv2_0397_2_48
Type: peptidase
Location: 61928 - 62857 (+)
Gene ID: HRGMv2_0397_2_49
Type: pfam
Location: 62864 - 64810 (+)
Gene ID: HRGMv2_0397_2_50
Type: TC
Location: 64818 - 66254 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List