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Cluster: HRGMv2_0397_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0397_10 HRGMv2_0397_10_27 32652 33836 - 2.A.1.7.17
CAZyme HRGMv2_0397_10 HRGMv2_0397_10_28 33856 35697 - GH32
TF HRGMv2_0397_10 HRGMv2_0397_10_29 35903 38638 + HTH_AraC
TC HRGMv2_0397_10 HRGMv2_0397_10_30 38849 41887 + 1.B.14.6.1
pfam HRGMv2_0397_10 HRGMv2_0397_10_31 41906 43579 + SusD_RagB | SusD-like_3
pfam HRGMv2_0397_10 HRGMv2_0397_10_32 43598 45067 + DUF4960
CAZyme HRGMv2_0397_10 HRGMv2_0397_10_33 45138 47516 + GH32
TF HRGMv2_0397_10 HRGMv2_0397_10_34 47709 47885 - Rrf2
TC HRGMv2_0397_10 HRGMv2_0397_10_35 47988 49898 - 1.A.33.1.2
Gene ID: HRGMv2_0397_10_27
Type: TC
Location: 32652 - 33836 (-)
Gene ID: HRGMv2_0397_10_28
Type: CAZyme
Location: 33856 - 35697 (-)
Gene ID: HRGMv2_0397_10_29
Type: TF
Location: 35903 - 38638 (+)
Gene ID: HRGMv2_0397_10_30
Type: TC
Location: 38849 - 41887 (+)
Gene ID: HRGMv2_0397_10_31
Type: pfam
Location: 41906 - 43579 (+)
Gene ID: HRGMv2_0397_10_32
Type: pfam
Location: 43598 - 45067 (+)
Gene ID: HRGMv2_0397_10_33
Type: CAZyme
Location: 45138 - 47516 (+)
Gene ID: HRGMv2_0397_10_34
Type: TF
Location: 47709 - 47885 (-)
Gene ID: HRGMv2_0397_10_35
Type: TC
Location: 47988 - 49898 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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