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Cluster: HRGMv2_0385_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0385_13 HRGMv2_0385_13_25 24447 25868 + 3.A.1.26.3
pfam HRGMv2_0385_13 HRGMv2_0385_13_26 26074 28356 + KH_1 | S1 | RNase_PH | RNase_PH | RNase_PH_C | RNase_PH_C | PNPase
pfam HRGMv2_0385_13 HRGMv2_0385_13_27 28475 29512 + Acyl_transf_3
TC HRGMv2_0385_13 HRGMv2_0385_13_28 29618 30436 + 1.B.18.3.1
TC HRGMv2_0385_13 HRGMv2_0385_13_29 30473 32848 + 8.A.3.3.4
NULL(UNKNOWN) HRGMv2_0385_13 HRGMv2_0385_13_30 32891 34360 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_0385_13 HRGMv2_0385_13_31 34341 35873 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0385_13 HRGMv2_0385_13_32 35812 36960 + GT4
CAZyme HRGMv2_0385_13 HRGMv2_0385_13_33 36975 37937 - GT2
Gene ID: HRGMv2_0385_13_25
Type: TC
Location: 24447 - 25868 (+)
Gene ID: HRGMv2_0385_13_26
Type: pfam
Location: 26074 - 28356 (+)
Gene ID: HRGMv2_0385_13_27
Type: pfam
Location: 28475 - 29512 (+)
Gene ID: HRGMv2_0385_13_28
Type: TC
Location: 29618 - 30436 (+)
Gene ID: HRGMv2_0385_13_29
Type: TC
Location: 30473 - 32848 (+)
Gene ID: HRGMv2_0385_13_30
Type:
Location: 32891 - 34360 (+)
Gene ID: HRGMv2_0385_13_31
Type:
Location: 34341 - 35873 (+)
Gene ID: HRGMv2_0385_13_32
Type: CAZyme
Location: 35812 - 36960 (+)
Gene ID: HRGMv2_0385_13_33
Type: CAZyme
Location: 36975 - 37937 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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