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Cluster: HRGMv2_0374_CGC57

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0374_42 HRGMv2_0374_42_6 5633 6436 + 2.A.64.2.1
NULL(UNKNOWN) HRGMv2_0374_42 HRGMv2_0374_42_7 6549 6668 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0374_42 HRGMv2_0374_42_8 6753 10148 + AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30
TC HRGMv2_0374_42 HRGMv2_0374_42_9 10423 11967 - 2.A.1.14.25
pfam HRGMv2_0374_42 HRGMv2_0374_42_10 12107 13042 - KduI
TC HRGMv2_0374_42 HRGMv2_0374_42_11 13100 14473 - 4.A.5.1.2
CAZyme HRGMv2_0374_42 HRGMv2_0374_42_12 14770 15993 + GH105
CAZyme HRGMv2_0374_42 HRGMv2_0374_42_13 16010 16993 + CE8
CAZyme HRGMv2_0374_42 HRGMv2_0374_42_14 17069 18820 + CE12 | CE8
CAZyme HRGMv2_0374_42 HRGMv2_0374_42_15 18957 20117 - CE19
Gene ID: HRGMv2_0374_42_6
Type: TC
Location: 5633 - 6436 (+)
Gene ID: HRGMv2_0374_42_7
Type:
Location: 6549 - 6668 (+)
Gene ID: HRGMv2_0374_42_8
Type: pfam
Location: 6753 - 10148 (+)
Gene ID: HRGMv2_0374_42_9
Type: TC
Location: 10423 - 11967 (-)
Gene ID: HRGMv2_0374_42_10
Type: pfam
Location: 12107 - 13042 (-)
Gene ID: HRGMv2_0374_42_11
Type: TC
Location: 13100 - 14473 (-)
Gene ID: HRGMv2_0374_42_12
Type: CAZyme
Location: 14770 - 15993 (+)
Gene ID: HRGMv2_0374_42_13
Type: CAZyme
Location: 16010 - 16993 (+)
Gene ID: HRGMv2_0374_42_14
Type: CAZyme
Location: 17069 - 18820 (+)
Gene ID: HRGMv2_0374_42_15
Type: CAZyme
Location: 18957 - 20117 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0374_42_11 vegetarian > omnivore 1.11539 0.04840

🧭 Explore Read Mapping of CGC

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