Cluster: HRGMv2_0374_CGC54
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0374
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0374_35 | HRGMv2_0374_35_31 | 28131 | 28628 | + | GH24 |
| pfam | HRGMv2_0374_35 | HRGMv2_0374_35_32 | 28717 | 29925 | + | Phage_integrase | Phage_int_SAM_5 | Arm-DNA-bind_5 |
| pfam | HRGMv2_0374_35 | HRGMv2_0374_35_33 | 30431 | 31003 | + | NusG |
| TC | HRGMv2_0374_35 | HRGMv2_0374_35_34 | 31102 | 32259 | + | 9.B.146.1.4 |
Gene ID: HRGMv2_0374_35_31
Type: CAZyme
Location: 28131 - 28628 (+)
Type: CAZyme
Location: 28131 - 28628 (+)
Gene ID: HRGMv2_0374_35_32
Type: pfam
Location: 28717 - 29925 (+)
Type: pfam
Location: 28717 - 29925 (+)
Gene ID: HRGMv2_0374_35_33
Type: pfam
Location: 30431 - 31003 (+)
Type: pfam
Location: 30431 - 31003 (+)
Gene ID: HRGMv2_0374_35_34
Type: TC
Location: 31102 - 32259 (+)
Type: TC
Location: 31102 - 32259 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides pullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0374_35_31 | vegetarian > omnivore | 1.20440 | 0.02609 |
| HRGMv2_0374_35_32 | vegetarian > omnivore | 1.50309 | 0.02609 |
| HRGMv2_0374_35_33 | vegetarian > omnivore | 1.60669 | 0.02609 |
| HRGMv2_0374_35_34 | vegan > omnivore | 1.04967 | 0.01882 |
| HRGMv2_0374_35_34 | vegetarian > omnivore | 1.38951 | 0.04379 |