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Cluster: HRGMv2_0374_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0374_17 HRGMv2_0374_17_50 55025 56368 - 2.A.66.1.26
NULL(UNKNOWN) HRGMv2_0374_17 HRGMv2_0374_17_51 56543 56653 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0374_17 HRGMv2_0374_17_52 56765 57043 + Lys_export
TC HRGMv2_0374_17 HRGMv2_0374_17_53 57040 57660 + 2.A.124.1.4
pfam HRGMv2_0374_17 HRGMv2_0374_17_54 57686 61090 - DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter
CAZyme HRGMv2_0374_17 HRGMv2_0374_17_55 61183 61977 + GT2
peptidase HRGMv2_0374_17 HRGMv2_0374_17_56 61983 63332 + M38.UNW
TF HRGMv2_0374_17 HRGMv2_0374_17_57 63410 64330 - HTH_AraC
TC HRGMv2_0374_17 HRGMv2_0374_17_58 64553 65635 + 2.A.6.2.9
TC HRGMv2_0374_17 HRGMv2_0374_17_59 65646 66341 + 2.A.6.2.19
TC HRGMv2_0374_17 HRGMv2_0374_17_60 66338 67411 + 2.A.6.2.22
TC HRGMv2_0374_17 HRGMv2_0374_17_61 67579 68835 + 2.A.6.2.22
TC HRGMv2_0374_17 HRGMv2_0374_17_62 68848 70221 + 2.A.6.2.23
TC HRGMv2_0374_17 HRGMv2_0374_17_63 70432 71538 + 3.D.2.3.1
Gene ID: HRGMv2_0374_17_50
Type: TC
Location: 55025 - 56368 (-)
Gene ID: HRGMv2_0374_17_51
Type:
Location: 56543 - 56653 (+)
Gene ID: HRGMv2_0374_17_52
Type: pfam
Location: 56765 - 57043 (+)
Gene ID: HRGMv2_0374_17_53
Type: TC
Location: 57040 - 57660 (+)
Gene ID: HRGMv2_0374_17_54
Type: pfam
Location: 57686 - 61090 (-)
Gene ID: HRGMv2_0374_17_55
Type: CAZyme
Location: 61183 - 61977 (+)
Gene ID: HRGMv2_0374_17_56
Type: peptidase
Location: 61983 - 63332 (+)
Gene ID: HRGMv2_0374_17_57
Type: TF
Location: 63410 - 64330 (-)
Gene ID: HRGMv2_0374_17_58
Type: TC
Location: 64553 - 65635 (+)
Gene ID: HRGMv2_0374_17_59
Type: TC
Location: 65646 - 66341 (+)
Gene ID: HRGMv2_0374_17_60
Type: TC
Location: 66338 - 67411 (+)
Gene ID: HRGMv2_0374_17_61
Type: TC
Location: 67579 - 68835 (+)
Gene ID: HRGMv2_0374_17_62
Type: TC
Location: 68848 - 70221 (+)
Gene ID: HRGMv2_0374_17_63
Type: TC
Location: 70432 - 71538 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0374_17_55 vegetarian > vegan 1.31210 0.03585

🧭 Explore Read Mapping of CGC

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