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Cluster: HRGMv2_0374_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0374_12 HRGMv2_0374_12_30 27895 29184 - 2.A.40.7.6
NULL(UNKNOWN) HRGMv2_0374_12 HRGMv2_0374_12_31 29592 29765 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0374_12 HRGMv2_0374_12_32 30045 31166 + YhcG_C | DUF1016_N
TC HRGMv2_0374_12 HRGMv2_0374_12_33 31325 33340 - 2.A.72.1.3
pfam HRGMv2_0374_12 HRGMv2_0374_12_34 33688 34140 + DUF4405
pfam HRGMv2_0374_12 HRGMv2_0374_12_35 34493 35578 + NTP_transferase | NTP_transf_3
CAZyme HRGMv2_0374_12 HRGMv2_0374_12_36 35668 38001 - GH20
Gene ID: HRGMv2_0374_12_30
Type: TC
Location: 27895 - 29184 (-)
Gene ID: HRGMv2_0374_12_31
Type:
Location: 29592 - 29765 (+)
Gene ID: HRGMv2_0374_12_32
Type: pfam
Location: 30045 - 31166 (+)
Gene ID: HRGMv2_0374_12_33
Type: TC
Location: 31325 - 33340 (-)
Gene ID: HRGMv2_0374_12_34
Type: pfam
Location: 33688 - 34140 (+)
Gene ID: HRGMv2_0374_12_35
Type: pfam
Location: 34493 - 35578 (+)
Gene ID: HRGMv2_0374_12_36
Type: CAZyme
Location: 35668 - 38001 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0374_12_31 vegan > omnivore 1.64897 0.01882
HRGMv2_0374_12_31 vegetarian > omnivore 1.04178 0.02609
HRGMv2_0374_12_35 vegan > omnivore 1.40846 0.01882

🧭 Explore Read Mapping of CGC

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