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Cluster: HRGMv2_0374_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0374_1 HRGMv2_0374_1_92 119633 120475 - 1.A.23.2.1
pfam HRGMv2_0374_1 HRGMv2_0374_1_93 120671 121969 + Mur_ligase | Mur_ligase_C | Mur_ligase_M
pfam HRGMv2_0374_1 HRGMv2_0374_1_94 121964 122392 - VanZ
TC HRGMv2_0374_1 HRGMv2_0374_1_95 122454 123821 + 2.A.22.5.3
pfam HRGMv2_0374_1 HRGMv2_0374_1_96 123834 124790 + HHH_3 | HHH_3 | HHH_3
TC HRGMv2_0374_1 HRGMv2_0374_1_97 124741 125448 - 3.A.1.122.2
pfam HRGMv2_0374_1 HRGMv2_0374_1_98 125466 126176 - ThiF
TC HRGMv2_0374_1 HRGMv2_0374_1_99 126176 128308 - 2.A.37.2.5
pfam HRGMv2_0374_1 HRGMv2_0374_1_100 128617 129624 + Semialdhyde_dh | Semialdhyde_dhC
NULL(UNKNOWN) HRGMv2_0374_1 HRGMv2_0374_1_101 129784 130635 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0374_1 HRGMv2_0374_1_102 130990 134328 + 1.B.14.6.1
pfam HRGMv2_0374_1 HRGMv2_0374_1_103 134351 136249 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0374_1 HRGMv2_0374_1_104 136497 137669 + GH171
TC HRGMv2_0374_1 HRGMv2_0374_1_105 137763 139232 + 2.A.21.3.7
NULL(UNKNOWN) HRGMv2_0374_1 HRGMv2_0374_1_106 139250 142333 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0374_1 HRGMv2_0374_1_107 142362 144224 + Metallophos | PQQ | PQQ | PQQ | PQQ_2 | PQQ_2 | PQQ_2 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4
CAZyme HRGMv2_0374_1 HRGMv2_0374_1_108 144255 145709 + GT2
Gene ID: HRGMv2_0374_1_92
Type: TC
Location: 119633 - 120475 (-)
Gene ID: HRGMv2_0374_1_93
Type: pfam
Location: 120671 - 121969 (+)
Gene ID: HRGMv2_0374_1_94
Type: pfam
Location: 121964 - 122392 (-)
Gene ID: HRGMv2_0374_1_95
Type: TC
Location: 122454 - 123821 (+)
Gene ID: HRGMv2_0374_1_96
Type: pfam
Location: 123834 - 124790 (+)
Gene ID: HRGMv2_0374_1_97
Type: TC
Location: 124741 - 125448 (-)
Gene ID: HRGMv2_0374_1_98
Type: pfam
Location: 125466 - 126176 (-)
Gene ID: HRGMv2_0374_1_99
Type: TC
Location: 126176 - 128308 (-)
Gene ID: HRGMv2_0374_1_100
Type: pfam
Location: 128617 - 129624 (+)
Gene ID: HRGMv2_0374_1_101
Type:
Location: 129784 - 130635 (+)
Gene ID: HRGMv2_0374_1_102
Type: TC
Location: 130990 - 134328 (+)
Gene ID: HRGMv2_0374_1_103
Type: pfam
Location: 134351 - 136249 (+)
Gene ID: HRGMv2_0374_1_104
Type: CAZyme
Location: 136497 - 137669 (+)
Gene ID: HRGMv2_0374_1_105
Type: TC
Location: 137763 - 139232 (+)
Gene ID: HRGMv2_0374_1_106
Type:
Location: 139250 - 142333 (+)
Gene ID: HRGMv2_0374_1_107
Type: pfam
Location: 142362 - 144224 (+)
Gene ID: HRGMv2_0374_1_108
Type: CAZyme
Location: 144255 - 145709 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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