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Cluster: HRGMv2_0374_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0374_3 HRGMv2_0374_3_151 173438 174088 + 4.F.1.3.2
pfam HRGMv2_0374_3 HRGMv2_0374_3_152 174093 175025 + PAP2 | PAP2_3
TF HRGMv2_0374_3 HRGMv2_0374_3_153 175043 179122 - HTH_AraC
TC HRGMv2_0374_3 HRGMv2_0374_3_154 179603 182809 + 1.B.14.6.1
pfam HRGMv2_0374_3 HRGMv2_0374_3_155 182831 184801 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0374_3 HRGMv2_0374_3_156 184914 186296 + GH29
sulfatase HRGMv2_0374_3 HRGMv2_0374_3_157 186353 187912 + S1_16
CAZyme HRGMv2_0374_3 HRGMv2_0374_3_158 188091 190946 - CBM32
NULL(UNKNOWN) HRGMv2_0374_3 HRGMv2_0374_3_159 190981 191073 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0374_3 HRGMv2_0374_3_160 191168 192511 - CBM32
pfam HRGMv2_0374_3 HRGMv2_0374_3_161 192545 194455 - SusD_RagB | SusD-like_3
TC HRGMv2_0374_3 HRGMv2_0374_3_162 194477 197671 - 1.B.14.6.1
Gene ID: HRGMv2_0374_3_151
Type: TC
Location: 173438 - 174088 (+)
Gene ID: HRGMv2_0374_3_152
Type: pfam
Location: 174093 - 175025 (+)
Gene ID: HRGMv2_0374_3_153
Type: TF
Location: 175043 - 179122 (-)
Gene ID: HRGMv2_0374_3_154
Type: TC
Location: 179603 - 182809 (+)
Gene ID: HRGMv2_0374_3_155
Type: pfam
Location: 182831 - 184801 (+)
Gene ID: HRGMv2_0374_3_156
Type: CAZyme
Location: 184914 - 186296 (+)
Gene ID: HRGMv2_0374_3_157
Type: sulfatase
Location: 186353 - 187912 (+)
Gene ID: HRGMv2_0374_3_158
Type: CAZyme
Location: 188091 - 190946 (-)
Gene ID: HRGMv2_0374_3_159
Type:
Location: 190981 - 191073 (+)
Gene ID: HRGMv2_0374_3_160
Type: CAZyme
Location: 191168 - 192511 (-)
Gene ID: HRGMv2_0374_3_161
Type: pfam
Location: 192545 - 194455 (-)
Gene ID: HRGMv2_0374_3_162
Type: TC
Location: 194477 - 197671 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0374_3_157 vegetarian > vegan 1.83208 0.03968

🧭 Explore Read Mapping of CGC

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