Cluster: HRGMv2_0358_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0358
- CGC Family ID: CGCFAM_02057
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0358_13 | HRGMv2_0358_13_5 | 6697 | 8004 | + | GH2 |
| pfam | HRGMv2_0358_13 | HRGMv2_0358_13_6 | 8411 | 8884 | + | SPOUT_MTase |
| TF | HRGMv2_0358_13 | HRGMv2_0358_13_7 | 8886 | 9593 | + | GerE |
| TC | HRGMv2_0358_13 | HRGMv2_0358_13_8 | 9933 | 12218 | + | 1.B.14.8.4 |
| NULL(UNKNOWN) | HRGMv2_0358_13 | HRGMv2_0358_13_9 | 12237 | 12791 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0358_13 | HRGMv2_0358_13_10 | 13052 | 13525 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0358_13 | HRGMv2_0358_13_11 | 13518 | 15170 | - | 9.B.174.1.1 |
Gene ID: HRGMv2_0358_13_5
Type: CAZyme
Location: 6697 - 8004 (+)
Type: CAZyme
Location: 6697 - 8004 (+)
Gene ID: HRGMv2_0358_13_6
Type: pfam
Location: 8411 - 8884 (+)
Type: pfam
Location: 8411 - 8884 (+)
Gene ID: HRGMv2_0358_13_7
Type: TF
Location: 8886 - 9593 (+)
Type: TF
Location: 8886 - 9593 (+)
Gene ID: HRGMv2_0358_13_8
Type: TC
Location: 9933 - 12218 (+)
Type: TC
Location: 9933 - 12218 (+)
Gene ID: HRGMv2_0358_13_9
Type:
Location: 12237 - 12791 (+)
Type:
Location: 12237 - 12791 (+)
Gene ID: HRGMv2_0358_13_10
Type:
Location: 13052 - 13525 (-)
Type:
Location: 13052 - 13525 (-)
Gene ID: HRGMv2_0358_13_11
Type: TC
Location: 13518 - 15170 (-)
Type: TC
Location: 13518 - 15170 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp902363575
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.