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Cluster: HRGMv2_0352_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0352_2 HRGMv2_0352_2_28 50688 52388 + 9.B.174.1.1
pfam HRGMv2_0352_2 HRGMv2_0352_2_29 52398 55826 + DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter
CAZyme HRGMv2_0352_2 HRGMv2_0352_2_30 56062 57228 + GH43_33
CAZyme HRGMv2_0352_2 HRGMv2_0352_2_31 57284 59107 + GH2
CAZyme HRGMv2_0352_2 HRGMv2_0352_2_32 59298 62279 + GH43_31
pfam HRGMv2_0352_2 HRGMv2_0352_2_33 62896 63453 + NusG
TC HRGMv2_0352_2 HRGMv2_0352_2_34 63637 64791 + 9.B.146.1.4
pfam HRGMv2_0352_2 HRGMv2_0352_2_35 64986 65810 + Poly_export | SLBB | SLBB_2
TC HRGMv2_0352_2 HRGMv2_0352_2_36 65948 68428 + 8.A.3.3.3
Gene ID: HRGMv2_0352_2_28
Type: TC
Location: 50688 - 52388 (+)
Gene ID: HRGMv2_0352_2_29
Type: pfam
Location: 52398 - 55826 (+)
Gene ID: HRGMv2_0352_2_30
Type: CAZyme
Location: 56062 - 57228 (+)
Gene ID: HRGMv2_0352_2_31
Type: CAZyme
Location: 57284 - 59107 (+)
Gene ID: HRGMv2_0352_2_32
Type: CAZyme
Location: 59298 - 62279 (+)
Gene ID: HRGMv2_0352_2_33
Type: pfam
Location: 62896 - 63453 (+)
Gene ID: HRGMv2_0352_2_34
Type: TC
Location: 63637 - 64791 (+)
Gene ID: HRGMv2_0352_2_35
Type: pfam
Location: 64986 - 65810 (+)
Gene ID: HRGMv2_0352_2_36
Type: TC
Location: 65948 - 68428 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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