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Cluster: HRGMv2_0352_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0352_46 HRGMv2_0352_46_1 3 1685 - GH93
CAZyme HRGMv2_0352_46 HRGMv2_0352_46_2 1682 3541 - GH93
CAZyme HRGMv2_0352_46 HRGMv2_0352_46_3 3544 5343 - CBM9 | GH93
CAZyme HRGMv2_0352_46 HRGMv2_0352_46_4 5409 7274 - GH93
pfam HRGMv2_0352_46 HRGMv2_0352_46_5 7494 8468 - DUF5017
pfam HRGMv2_0352_46 HRGMv2_0352_46_6 8538 10262 - SusD_RagB | SusD-like_3
TC HRGMv2_0352_46 HRGMv2_0352_46_7 10298 13441 - 1.B.14.6.1
NULL(UNKNOWN) HRGMv2_0352_46 HRGMv2_0352_46_8 13813 15588 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0352_46 HRGMv2_0352_46_9 16109 17116 + GH43_31
CAZyme HRGMv2_0352_46 HRGMv2_0352_46_10 17154 19133 + GH182
Gene ID: HRGMv2_0352_46_1
Type: CAZyme
Location: 3 - 1685 (-)
Gene ID: HRGMv2_0352_46_2
Type: CAZyme
Location: 1682 - 3541 (-)
Gene ID: HRGMv2_0352_46_3
Type: CAZyme
Location: 3544 - 5343 (-)
Gene ID: HRGMv2_0352_46_4
Type: CAZyme
Location: 5409 - 7274 (-)
Gene ID: HRGMv2_0352_46_5
Type: pfam
Location: 7494 - 8468 (-)
Gene ID: HRGMv2_0352_46_6
Type: pfam
Location: 8538 - 10262 (-)
Gene ID: HRGMv2_0352_46_7
Type: TC
Location: 10298 - 13441 (-)
Gene ID: HRGMv2_0352_46_8
Type:
Location: 13813 - 15588 (-)
Gene ID: HRGMv2_0352_46_9
Type: CAZyme
Location: 16109 - 17116 (+)
Gene ID: HRGMv2_0352_46_10
Type: CAZyme
Location: 17154 - 19133 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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