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Cluster: HRGMv2_0342_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0342_2 HRGMv2_0342_2_63 65076 66755 + 2.A.81.1.2
TF HRGMv2_0342_2 HRGMv2_0342_2_64 66883 70689 - HTH_AraC
TC HRGMv2_0342_2 HRGMv2_0342_2_65 71314 74439 + 1.B.14.6.1
pfam HRGMv2_0342_2 HRGMv2_0342_2_66 74485 76149 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0342_2 HRGMv2_0342_2_67 76434 77585 + CE1
NULL(UNKNOWN) HRGMv2_0342_2 HRGMv2_0342_2_68 77707 78453 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0342_2 HRGMv2_0342_2_69 78450 79907 + GH43_7 | GH43_7
peptidase HRGMv2_0342_2 HRGMv2_0342_2_70 79995 82160 - M03.UPA
pfam HRGMv2_0342_2 HRGMv2_0342_2_71 82188 83318 - Exo_endo_phos
TC HRGMv2_0342_2 HRGMv2_0342_2_72 83327 84268 - 9.B.104.1.2
Gene ID: HRGMv2_0342_2_63
Type: TC
Location: 65076 - 66755 (+)
Gene ID: HRGMv2_0342_2_64
Type: TF
Location: 66883 - 70689 (-)
Gene ID: HRGMv2_0342_2_65
Type: TC
Location: 71314 - 74439 (+)
Gene ID: HRGMv2_0342_2_66
Type: pfam
Location: 74485 - 76149 (+)
Gene ID: HRGMv2_0342_2_67
Type: CAZyme
Location: 76434 - 77585 (+)
Gene ID: HRGMv2_0342_2_68
Type:
Location: 77707 - 78453 (+)
Gene ID: HRGMv2_0342_2_69
Type: CAZyme
Location: 78450 - 79907 (+)
Gene ID: HRGMv2_0342_2_70
Type: peptidase
Location: 79995 - 82160 (-)
Gene ID: HRGMv2_0342_2_71
Type: pfam
Location: 82188 - 83318 (-)
Gene ID: HRGMv2_0342_2_72
Type: TC
Location: 83327 - 84268 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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