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Cluster: HRGMv2_0342_CGC45

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0342_19 HRGMv2_0342_19_7 6546 8036 - GH30_2
pfam HRGMv2_0342_19 HRGMv2_0342_19_8 8166 9905 - SusD_RagB | SusD-like_3
TC HRGMv2_0342_19 HRGMv2_0342_19_9 9926 12931 - 1.B.14.6.1
TF HRGMv2_0342_19 HRGMv2_0342_19_10 13181 17230 - HTH_AraC
pfam HRGMv2_0342_19 HRGMv2_0342_19_11 17307 18740 - AhpC-TSA | Redoxin | Thioredoxin_8
TC HRGMv2_0342_19 HRGMv2_0342_19_12 18905 22081 - 2.A.6.2.16
TC HRGMv2_0342_19 HRGMv2_0342_19_13 22101 23222 - 2.A.6.2.44
TC HRGMv2_0342_19 HRGMv2_0342_19_14 23251 24672 - 1.B.17.3.8
pfam HRGMv2_0342_19 HRGMv2_0342_19_15 24805 25095 - DciA
pfam HRGMv2_0342_19 HRGMv2_0342_19_16 25082 26197 - SMC_N | AAA_15 | AAA_23
CAZyme HRGMv2_0342_19 HRGMv2_0342_19_17 26293 27507 - CE15
TC HRGMv2_0342_19 HRGMv2_0342_19_18 27817 29130 + 1.B.3.3.1
Gene ID: HRGMv2_0342_19_7
Type: CAZyme
Location: 6546 - 8036 (-)
Gene ID: HRGMv2_0342_19_8
Type: pfam
Location: 8166 - 9905 (-)
Gene ID: HRGMv2_0342_19_9
Type: TC
Location: 9926 - 12931 (-)
Gene ID: HRGMv2_0342_19_10
Type: TF
Location: 13181 - 17230 (-)
Gene ID: HRGMv2_0342_19_11
Type: pfam
Location: 17307 - 18740 (-)
Gene ID: HRGMv2_0342_19_12
Type: TC
Location: 18905 - 22081 (-)
Gene ID: HRGMv2_0342_19_13
Type: TC
Location: 22101 - 23222 (-)
Gene ID: HRGMv2_0342_19_14
Type: TC
Location: 23251 - 24672 (-)
Gene ID: HRGMv2_0342_19_15
Type: pfam
Location: 24805 - 25095 (-)
Gene ID: HRGMv2_0342_19_16
Type: pfam
Location: 25082 - 26197 (-)
Gene ID: HRGMv2_0342_19_17
Type: CAZyme
Location: 26293 - 27507 (-)
Gene ID: HRGMv2_0342_19_18
Type: TC
Location: 27817 - 29130 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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