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Cluster: HRGMv2_0342_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0342_16 HRGMv2_0342_16_4 5917 7128 - GH8
pfam HRGMv2_0342_16 HRGMv2_0342_16_5 7337 8629 - tRNA-synt_1b | SYY_C-terminal
TC HRGMv2_0342_16 HRGMv2_0342_16_6 8803 10233 + 3.A.1.2.4
peptidase HRGMv2_0342_16 HRGMv2_0342_16_7 10314 11309 + M28.UNW
pfam HRGMv2_0342_16 HRGMv2_0342_16_8 11329 11772 + SufE
TC HRGMv2_0342_16 HRGMv2_0342_16_9 11835 13526 + 2.A.17.1.1
pfam HRGMv2_0342_16 HRGMv2_0342_16_10 13685 14644 + OTCace | OTCace_N
TC HRGMv2_0342_16 HRGMv2_0342_16_11 14650 15444 + 1.A.16.2.4
Gene ID: HRGMv2_0342_16_4
Type: CAZyme
Location: 5917 - 7128 (-)
Gene ID: HRGMv2_0342_16_5
Type: pfam
Location: 7337 - 8629 (-)
Gene ID: HRGMv2_0342_16_6
Type: TC
Location: 8803 - 10233 (+)
Gene ID: HRGMv2_0342_16_7
Type: peptidase
Location: 10314 - 11309 (+)
Gene ID: HRGMv2_0342_16_8
Type: pfam
Location: 11329 - 11772 (+)
Gene ID: HRGMv2_0342_16_9
Type: TC
Location: 11835 - 13526 (+)
Gene ID: HRGMv2_0342_16_10
Type: pfam
Location: 13685 - 14644 (+)
Gene ID: HRGMv2_0342_16_11
Type: TC
Location: 14650 - 15444 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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