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Cluster: HRGMv2_0342_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0342_15 HRGMv2_0342_15_55 54369 55337 - GT2
CAZyme HRGMv2_0342_15 HRGMv2_0342_15_56 55360 56382 - GT2
CAZyme HRGMv2_0342_15 HRGMv2_0342_15_57 56452 57273 + GT2
pfam HRGMv2_0342_15 HRGMv2_0342_15_58 57275 58021 + Kdo
CAZyme HRGMv2_0342_15 HRGMv2_0342_15_59 58042 58863 + GT2
CAZyme HRGMv2_0342_15 HRGMv2_0342_15_60 58866 59630 - GT2
pfam HRGMv2_0342_15 HRGMv2_0342_15_61 59649 60359 - DNA_alkylation
TC HRGMv2_0342_15 HRGMv2_0342_15_62 60654 61886 + 9.B.156.3.1
pfam HRGMv2_0342_15 HRGMv2_0342_15_63 61967 62401 + YbeY
TC HRGMv2_0342_15 HRGMv2_0342_15_64 62427 64304 + 1.C.39.4.5
Gene ID: HRGMv2_0342_15_55
Type: CAZyme
Location: 54369 - 55337 (-)
Gene ID: HRGMv2_0342_15_56
Type: CAZyme
Location: 55360 - 56382 (-)
Gene ID: HRGMv2_0342_15_57
Type: CAZyme
Location: 56452 - 57273 (+)
Gene ID: HRGMv2_0342_15_58
Type: pfam
Location: 57275 - 58021 (+)
Gene ID: HRGMv2_0342_15_59
Type: CAZyme
Location: 58042 - 58863 (+)
Gene ID: HRGMv2_0342_15_60
Type: CAZyme
Location: 58866 - 59630 (-)
Gene ID: HRGMv2_0342_15_61
Type: pfam
Location: 59649 - 60359 (-)
Gene ID: HRGMv2_0342_15_62
Type: TC
Location: 60654 - 61886 (+)
Gene ID: HRGMv2_0342_15_63
Type: pfam
Location: 61967 - 62401 (+)
Gene ID: HRGMv2_0342_15_64
Type: TC
Location: 62427 - 64304 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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