Cluster: HRGMv2_0342_CGC31
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate: pectin
- Genome ID: HRGMv2_0342
- CGC Family ID: CGCFAM_00108
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0342_10 | HRGMv2_0342_10_67 | 78692 | 80239 | - | GH51_1 |
| CAZyme | HRGMv2_0342_10 | HRGMv2_0342_10_68 | 80271 | 81251 | - | GH43_29 |
| CAZyme | HRGMv2_0342_10 | HRGMv2_0342_10_69 | 81259 | 83244 | - | GH51_2 |
| CAZyme | HRGMv2_0342_10 | HRGMv2_0342_10_70 | 83289 | 84776 | - | GH43_4 |
| TF | HRGMv2_0342_10 | HRGMv2_0342_10_71 | 85022 | 89320 | + | HTH_AraC |
| pfam | HRGMv2_0342_10 | HRGMv2_0342_10_72 | 89626 | 91869 | + | Laminin_G_3 | Laminin_G_3 | Laminin_G_3 |
| TC | HRGMv2_0342_10 | HRGMv2_0342_10_73 | 91896 | 95024 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0342_10 | HRGMv2_0342_10_74 | 95032 | 96852 | + | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0342_10 | HRGMv2_0342_10_75 | 96885 | 100115 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0342_10 | HRGMv2_0342_10_76 | 100137 | 101921 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0342_10 | HRGMv2_0342_10_77 | 101961 | 103871 | + | GH43_4 |
| NULL(UNKNOWN) | HRGMv2_0342_10 | HRGMv2_0342_10_78 | 104218 | 104658 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0342_10 | HRGMv2_0342_10_79 | 104781 | 105512 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0342_10 | HRGMv2_0342_10_80 | 105636 | 107645 | + | GH51_2 |
Gene ID: HRGMv2_0342_10_67
Type: CAZyme
Location: 78692 - 80239 (-)
Type: CAZyme
Location: 78692 - 80239 (-)
Gene ID: HRGMv2_0342_10_68
Type: CAZyme
Location: 80271 - 81251 (-)
Type: CAZyme
Location: 80271 - 81251 (-)
Gene ID: HRGMv2_0342_10_69
Type: CAZyme
Location: 81259 - 83244 (-)
Type: CAZyme
Location: 81259 - 83244 (-)
Gene ID: HRGMv2_0342_10_70
Type: CAZyme
Location: 83289 - 84776 (-)
Type: CAZyme
Location: 83289 - 84776 (-)
Gene ID: HRGMv2_0342_10_71
Type: TF
Location: 85022 - 89320 (+)
Type: TF
Location: 85022 - 89320 (+)
Gene ID: HRGMv2_0342_10_72
Type: pfam
Location: 89626 - 91869 (+)
Type: pfam
Location: 89626 - 91869 (+)
Gene ID: HRGMv2_0342_10_73
Type: TC
Location: 91896 - 95024 (+)
Type: TC
Location: 91896 - 95024 (+)
Gene ID: HRGMv2_0342_10_74
Type: pfam
Location: 95032 - 96852 (+)
Type: pfam
Location: 95032 - 96852 (+)
Gene ID: HRGMv2_0342_10_75
Type: TC
Location: 96885 - 100115 (+)
Type: TC
Location: 96885 - 100115 (+)
Gene ID: HRGMv2_0342_10_76
Type: pfam
Location: 100137 - 101921 (+)
Type: pfam
Location: 100137 - 101921 (+)
Gene ID: HRGMv2_0342_10_77
Type: CAZyme
Location: 101961 - 103871 (+)
Type: CAZyme
Location: 101961 - 103871 (+)
Gene ID: HRGMv2_0342_10_78
Type:
Location: 104218 - 104658 (+)
Type:
Location: 104218 - 104658 (+)
Gene ID: HRGMv2_0342_10_79
Type:
Location: 104781 - 105512 (+)
Type:
Location: 104781 - 105512 (+)
Gene ID: HRGMv2_0342_10_80
Type: CAZyme
Location: 105636 - 107645 (+)
Type: CAZyme
Location: 105636 - 107645 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Muribaculum
Species
Muribaculum gordoncarteri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.