Cluster: HRGMv2_0342_CGC17
🧬 Cluster Details
- Gene Count: 22
- CAZyme Count: 12
- Substrate: xylan
- Genome ID: HRGMv2_0342
- CGC Family ID: CGCFAM_00238
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0342_5 | HRGMv2_0342_5_73 | 88214 | 89437 | + | 2.A.1.35.1 |
| TF | HRGMv2_0342_5 | HRGMv2_0342_5_74 | 89569 | 93588 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0342_5 | HRGMv2_0342_5_75 | 93641 | 96880 | - | CE6 | GH95 |
| CAZyme | HRGMv2_0342_5 | HRGMv2_0342_5_76 | 96897 | 97943 | - | GH43_29 |
| CAZyme | HRGMv2_0342_5 | HRGMv2_0342_5_77 | 97971 | 99266 | - | CBM6 | GH43_29 |
| CAZyme | HRGMv2_0342_5 | HRGMv2_0342_5_78 | 99317 | 101272 | - | GH97 |
| pfam | HRGMv2_0342_5 | HRGMv2_0342_5_79 | 101439 | 102875 | + | DUF6057 |
| pfam | HRGMv2_0342_5 | HRGMv2_0342_5_80 | 102877 | 104382 | - | PD40 | PD40 | PD40 |
| CAZyme | HRGMv2_0342_5 | HRGMv2_0342_5_81 | 104430 | 106973 | - | CBM6 | GH43_2 | GH8 |
| CAZyme | HRGMv2_0342_5 | HRGMv2_0342_5_82 | 106995 | 108113 | - | CE1 |
| CAZyme | HRGMv2_0342_5 | HRGMv2_0342_5_83 | 108110 | 109237 | - | CE1 |
| CAZyme | HRGMv2_0342_5 | HRGMv2_0342_5_84 | 109291 | 111852 | - | GH3 |
| CAZyme | HRGMv2_0342_5 | HRGMv2_0342_5_85 | 111943 | 114177 | - | GH10 |
| pfam | HRGMv2_0342_5 | HRGMv2_0342_5_86 | 114188 | 115231 | - | BT_3987-like_N | DUF5627 |
| pfam | HRGMv2_0342_5 | HRGMv2_0342_5_87 | 115259 | 117043 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0342_5 | HRGMv2_0342_5_88 | 117048 | 119906 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0342_5 | HRGMv2_0342_5_89 | 119943 | 121877 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0342_5 | HRGMv2_0342_5_90 | 121894 | 125028 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0342_5 | HRGMv2_0342_5_91 | 125176 | 126897 | - | CBM91 | GH43_12 |
| NULL(UNKNOWN) | HRGMv2_0342_5 | HRGMv2_0342_5_92 | 126971 | 127078 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0342_5 | HRGMv2_0342_5_93 | 127189 | 128817 | - | CBM91 | GH43_10 |
| CAZyme | HRGMv2_0342_5 | HRGMv2_0342_5_94 | 129198 | 130577 | + | CBM6 | GH43_29 |
Gene ID: HRGMv2_0342_5_73
Type: TC
Location: 88214 - 89437 (+)
Type: TC
Location: 88214 - 89437 (+)
Gene ID: HRGMv2_0342_5_74
Type: TF
Location: 89569 - 93588 (+)
Type: TF
Location: 89569 - 93588 (+)
Gene ID: HRGMv2_0342_5_75
Type: CAZyme
Location: 93641 - 96880 (-)
Type: CAZyme
Location: 93641 - 96880 (-)
Gene ID: HRGMv2_0342_5_76
Type: CAZyme
Location: 96897 - 97943 (-)
Type: CAZyme
Location: 96897 - 97943 (-)
Gene ID: HRGMv2_0342_5_77
Type: CAZyme
Location: 97971 - 99266 (-)
Type: CAZyme
Location: 97971 - 99266 (-)
Gene ID: HRGMv2_0342_5_78
Type: CAZyme
Location: 99317 - 101272 (-)
Type: CAZyme
Location: 99317 - 101272 (-)
Gene ID: HRGMv2_0342_5_79
Type: pfam
Location: 101439 - 102875 (+)
Type: pfam
Location: 101439 - 102875 (+)
Gene ID: HRGMv2_0342_5_80
Type: pfam
Location: 102877 - 104382 (-)
Type: pfam
Location: 102877 - 104382 (-)
Gene ID: HRGMv2_0342_5_81
Type: CAZyme
Location: 104430 - 106973 (-)
Type: CAZyme
Location: 104430 - 106973 (-)
Gene ID: HRGMv2_0342_5_82
Type: CAZyme
Location: 106995 - 108113 (-)
Type: CAZyme
Location: 106995 - 108113 (-)
Gene ID: HRGMv2_0342_5_83
Type: CAZyme
Location: 108110 - 109237 (-)
Type: CAZyme
Location: 108110 - 109237 (-)
Gene ID: HRGMv2_0342_5_84
Type: CAZyme
Location: 109291 - 111852 (-)
Type: CAZyme
Location: 109291 - 111852 (-)
Gene ID: HRGMv2_0342_5_85
Type: CAZyme
Location: 111943 - 114177 (-)
Type: CAZyme
Location: 111943 - 114177 (-)
Gene ID: HRGMv2_0342_5_86
Type: pfam
Location: 114188 - 115231 (-)
Type: pfam
Location: 114188 - 115231 (-)
Gene ID: HRGMv2_0342_5_87
Type: pfam
Location: 115259 - 117043 (-)
Type: pfam
Location: 115259 - 117043 (-)
Gene ID: HRGMv2_0342_5_88
Type: TC
Location: 117048 - 119906 (-)
Type: TC
Location: 117048 - 119906 (-)
Gene ID: HRGMv2_0342_5_89
Type: pfam
Location: 119943 - 121877 (-)
Type: pfam
Location: 119943 - 121877 (-)
Gene ID: HRGMv2_0342_5_90
Type: TC
Location: 121894 - 125028 (-)
Type: TC
Location: 121894 - 125028 (-)
Gene ID: HRGMv2_0342_5_91
Type: CAZyme
Location: 125176 - 126897 (-)
Type: CAZyme
Location: 125176 - 126897 (-)
Gene ID: HRGMv2_0342_5_92
Type:
Location: 126971 - 127078 (+)
Type:
Location: 126971 - 127078 (+)
Gene ID: HRGMv2_0342_5_93
Type: CAZyme
Location: 127189 - 128817 (-)
Type: CAZyme
Location: 127189 - 128817 (-)
Gene ID: HRGMv2_0342_5_94
Type: CAZyme
Location: 129198 - 130577 (+)
Type: CAZyme
Location: 129198 - 130577 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Muribaculum
Species
Muribaculum gordoncarteri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.