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Cluster: HRGMv2_0328_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0328_27 HRGMv2_0328_27_5 3761 5008 + 1.I.1.1.3
pfam HRGMv2_0328_27 HRGMv2_0328_27_6 5080 5559 - LMWPc
TC HRGMv2_0328_27 HRGMv2_0328_27_7 5569 6519 - 3.A.5.1.1
pfam HRGMv2_0328_27 HRGMv2_0328_27_8 6646 6933 - YgbA_NO
CAZyme HRGMv2_0328_27 HRGMv2_0328_27_9 7105 10968 + GH31_18
TF HRGMv2_0328_27 HRGMv2_0328_27_10 11214 12059 - HTH_AraC
TC HRGMv2_0328_27 HRGMv2_0328_27_11 12211 13323 + 2.A.6.2.29
TC HRGMv2_0328_27 HRGMv2_0328_27_12 13332 16511 + 2.A.6.2.22
TC HRGMv2_0328_27 HRGMv2_0328_27_13 16550 17917 + 2.A.6.2.23
Gene ID: HRGMv2_0328_27_5
Type: TC
Location: 3761 - 5008 (+)
Gene ID: HRGMv2_0328_27_6
Type: pfam
Location: 5080 - 5559 (-)
Gene ID: HRGMv2_0328_27_7
Type: TC
Location: 5569 - 6519 (-)
Gene ID: HRGMv2_0328_27_8
Type: pfam
Location: 6646 - 6933 (-)
Gene ID: HRGMv2_0328_27_9
Type: CAZyme
Location: 7105 - 10968 (+)
Gene ID: HRGMv2_0328_27_10
Type: TF
Location: 11214 - 12059 (-)
Gene ID: HRGMv2_0328_27_11
Type: TC
Location: 12211 - 13323 (+)
Gene ID: HRGMv2_0328_27_12
Type: TC
Location: 13332 - 16511 (+)
Gene ID: HRGMv2_0328_27_13
Type: TC
Location: 16550 - 17917 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Marinifilaceae
→
Genus
Odoribacter
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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