Cluster: HRGMv2_0326_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0326
- CGC Family ID: CGCFAM_05978
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0326_6 | HRGMv2_0326_6_4 | 2123 | 3583 | - | 3.A.1.15.3 |
| peptidase | HRGMv2_0326_6 | HRGMv2_0326_6_5 | 3694 | 4845 | - | S12.UPW |
| TF | HRGMv2_0326_6 | HRGMv2_0326_6_6 | 5268 | 9509 | + | HTH_AraC |
| CAZyme | HRGMv2_0326_6 | HRGMv2_0326_6_7 | 9940 | 12039 | + | PL1_2 |
| pfam | HRGMv2_0326_6 | HRGMv2_0326_6_8 | 12160 | 14541 | + | Fasciclin |
| TC | HRGMv2_0326_6 | HRGMv2_0326_6_9 | 14538 | 17810 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_0326_6_4
Type: TC
Location: 2123 - 3583 (-)
Type: TC
Location: 2123 - 3583 (-)
Gene ID: HRGMv2_0326_6_5
Type: peptidase
Location: 3694 - 4845 (-)
Type: peptidase
Location: 3694 - 4845 (-)
Gene ID: HRGMv2_0326_6_6
Type: TF
Location: 5268 - 9509 (+)
Type: TF
Location: 5268 - 9509 (+)
Gene ID: HRGMv2_0326_6_7
Type: CAZyme
Location: 9940 - 12039 (+)
Type: CAZyme
Location: 9940 - 12039 (+)
Gene ID: HRGMv2_0326_6_8
Type: pfam
Location: 12160 - 14541 (+)
Type: pfam
Location: 12160 - 14541 (+)
Gene ID: HRGMv2_0326_6_9
Type: TC
Location: 14538 - 17810 (+)
Type: TC
Location: 14538 - 17810 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma sp905210875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.