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Cluster: HRGMv2_0326_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0326_3 HRGMv2_0326_3_99 136011 137171 - 3.B.1.1.2
pfam HRGMv2_0326_3 HRGMv2_0326_3_100 137177 137605 - Biotin_lipoyl
pfam HRGMv2_0326_3 HRGMv2_0326_3_101 137617 138510 - LTD | OAD_gamma
TC HRGMv2_0326_3 HRGMv2_0326_3_102 138532 140085 - 3.B.1.1.2
STP HRGMv2_0326_3 HRGMv2_0326_3_103 140103 140516 - Glyoxalase
TC HRGMv2_0326_3 HRGMv2_0326_3_104 140956 142866 + 1.A.33.1.2
CAZyme HRGMv2_0326_3 HRGMv2_0326_3_105 143096 144664 - CE8
pfam HRGMv2_0326_3 HRGMv2_0326_3_106 144982 146049 + 2-Hacid_dh | 2-Hacid_dh_C
TC HRGMv2_0326_3 HRGMv2_0326_3_107 146065 147360 + 2.A.35.1.5
pfam HRGMv2_0326_3 HRGMv2_0326_3_108 147505 147984 + PgpA
pfam HRGMv2_0326_3 HRGMv2_0326_3_109 147990 148454 + GtrA_DPMS_TM
TC HRGMv2_0326_3 HRGMv2_0326_3_110 148480 149136 + 4.F.1.3.2
pfam HRGMv2_0326_3 HRGMv2_0326_3_111 149141 150070 + PAP2 | PAP2_3
pfam HRGMv2_0326_3 HRGMv2_0326_3_112 150239 150568 - DUF2752
TC HRGMv2_0326_3 HRGMv2_0326_3_113 150618 151112 - 8.A.58.2.7
Gene ID: HRGMv2_0326_3_99
Type: TC
Location: 136011 - 137171 (-)
Gene ID: HRGMv2_0326_3_100
Type: pfam
Location: 137177 - 137605 (-)
Gene ID: HRGMv2_0326_3_101
Type: pfam
Location: 137617 - 138510 (-)
Gene ID: HRGMv2_0326_3_102
Type: TC
Location: 138532 - 140085 (-)
Gene ID: HRGMv2_0326_3_103
Type: STP
Location: 140103 - 140516 (-)
Gene ID: HRGMv2_0326_3_104
Type: TC
Location: 140956 - 142866 (+)
Gene ID: HRGMv2_0326_3_105
Type: CAZyme
Location: 143096 - 144664 (-)
Gene ID: HRGMv2_0326_3_106
Type: pfam
Location: 144982 - 146049 (+)
Gene ID: HRGMv2_0326_3_107
Type: TC
Location: 146065 - 147360 (+)
Gene ID: HRGMv2_0326_3_108
Type: pfam
Location: 147505 - 147984 (+)
Gene ID: HRGMv2_0326_3_109
Type: pfam
Location: 147990 - 148454 (+)
Gene ID: HRGMv2_0326_3_110
Type: TC
Location: 148480 - 149136 (+)
Gene ID: HRGMv2_0326_3_111
Type: pfam
Location: 149141 - 150070 (+)
Gene ID: HRGMv2_0326_3_112
Type: pfam
Location: 150239 - 150568 (-)
Gene ID: HRGMv2_0326_3_113
Type: TC
Location: 150618 - 151112 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0326_3_100 vegetarian > vegan 4.06872 0.00536
HRGMv2_0326_3_103 vegetarian > omnivore 1.47873 0.04796
HRGMv2_0326_3_103 vegetarian > vegan 3.01005 0.00536

🧭 Explore Read Mapping of CGC

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