dbCAN Logo

Cluster: HRGMv2_0326_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0326_28 HRGMv2_0326_28_4 10689 11957 - 3.D.5.1.1
TC HRGMv2_0326_28 HRGMv2_0326_28_5 11971 12585 - 3.D.5.1.1
TC HRGMv2_0326_28 HRGMv2_0326_28_6 12608 13234 - 3.D.5.1.1
pfam HRGMv2_0326_28 HRGMv2_0326_28_7 13253 13954 - FMN_bind
TC HRGMv2_0326_28 HRGMv2_0326_28_8 13967 15175 - 3.D.5.1.1
TC HRGMv2_0326_28 HRGMv2_0326_28_9 15202 16548 - 3.D.5.1.1
pfam HRGMv2_0326_28 HRGMv2_0326_28_10 17321 18484 + HlyD_3 | HlyD_D23
TC HRGMv2_0326_28 HRGMv2_0326_28_11 18497 21592 + 2.A.6.1.5
NULL(UNKNOWN) HRGMv2_0326_28 HRGMv2_0326_28_12 21585 21866 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0326_28 HRGMv2_0326_28_13 21838 22758 + OEP
TC HRGMv2_0326_28 HRGMv2_0326_28_14 22960 24087 + 3.A.1.13.2
TC HRGMv2_0326_28 HRGMv2_0326_28_15 24084 25109 + 3.A.1.13.2
TC HRGMv2_0326_28 HRGMv2_0326_28_16 25109 26164 + 3.A.1.13.2
CAZyme HRGMv2_0326_28 HRGMv2_0326_28_17 26161 27300 - GT19
Gene ID: HRGMv2_0326_28_4
Type: TC
Location: 10689 - 11957 (-)
Gene ID: HRGMv2_0326_28_5
Type: TC
Location: 11971 - 12585 (-)
Gene ID: HRGMv2_0326_28_6
Type: TC
Location: 12608 - 13234 (-)
Gene ID: HRGMv2_0326_28_7
Type: pfam
Location: 13253 - 13954 (-)
Gene ID: HRGMv2_0326_28_8
Type: TC
Location: 13967 - 15175 (-)
Gene ID: HRGMv2_0326_28_9
Type: TC
Location: 15202 - 16548 (-)
Gene ID: HRGMv2_0326_28_10
Type: pfam
Location: 17321 - 18484 (+)
Gene ID: HRGMv2_0326_28_11
Type: TC
Location: 18497 - 21592 (+)
Gene ID: HRGMv2_0326_28_12
Type:
Location: 21585 - 21866 (+)
Gene ID: HRGMv2_0326_28_13
Type: pfam
Location: 21838 - 22758 (+)
Gene ID: HRGMv2_0326_28_14
Type: TC
Location: 22960 - 24087 (+)
Gene ID: HRGMv2_0326_28_15
Type: TC
Location: 24084 - 25109 (+)
Gene ID: HRGMv2_0326_28_16
Type: TC
Location: 25109 - 26164 (+)
Gene ID: HRGMv2_0326_28_17
Type: CAZyme
Location: 26161 - 27300 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0326_28_6 vegetarian > vegan 2.41437 0.00536
HRGMv2_0326_28_8 vegetarian > vegan 1.09905 0.00536

🧭 Explore Read Mapping of CGC

← Back to Cluster List