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Cluster: HRGMv2_0326_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0326_21 HRGMv2_0326_21_7 7435 9120 - 4.C.1.1.7
pfam HRGMv2_0326_21 HRGMv2_0326_21_8 9331 10014 - YkuD_2
CAZyme HRGMv2_0326_21 HRGMv2_0326_21_9 10252 11313 + GH43_1
pfam HRGMv2_0326_21 HRGMv2_0326_21_10 11475 12800 + UPF0004 | Radical_SAM
pfam HRGMv2_0326_21 HRGMv2_0326_21_11 12804 13700 + Lip_A_acyltrans
CAZyme HRGMv2_0326_21 HRGMv2_0326_21_12 13710 14708 + GT2
pfam HRGMv2_0326_21 HRGMv2_0326_21_13 14795 15451 - ACPS
NULL(UNKNOWN) HRGMv2_0326_21 HRGMv2_0326_21_14 15438 16034 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0326_21 HRGMv2_0326_21_15 16027 17199 - 9.A.40.1.2
Gene ID: HRGMv2_0326_21_7
Type: TC
Location: 7435 - 9120 (-)
Gene ID: HRGMv2_0326_21_8
Type: pfam
Location: 9331 - 10014 (-)
Gene ID: HRGMv2_0326_21_9
Type: CAZyme
Location: 10252 - 11313 (+)
Gene ID: HRGMv2_0326_21_10
Type: pfam
Location: 11475 - 12800 (+)
Gene ID: HRGMv2_0326_21_11
Type: pfam
Location: 12804 - 13700 (+)
Gene ID: HRGMv2_0326_21_12
Type: CAZyme
Location: 13710 - 14708 (+)
Gene ID: HRGMv2_0326_21_13
Type: pfam
Location: 14795 - 15451 (-)
Gene ID: HRGMv2_0326_21_14
Type:
Location: 15438 - 16034 (-)
Gene ID: HRGMv2_0326_21_15
Type: TC
Location: 16027 - 17199 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0326_21_7 vegetarian > vegan 2.67257 0.00536

🧭 Explore Read Mapping of CGC

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