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Cluster: HRGMv2_0326_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0326_15 HRGMv2_0326_15_16 16516 18393 - 1.C.39.4.5
pfam HRGMv2_0326_15 HRGMv2_0326_15_17 18397 18852 - YbeY
TC HRGMv2_0326_15 HRGMv2_0326_15_18 18971 20203 - 9.B.156.3.1
pfam HRGMv2_0326_15 HRGMv2_0326_15_19 20401 21369 + 2-Hacid_dh | 2-Hacid_dh_C | NAD_binding_2 | F420_oxidored
pfam HRGMv2_0326_15 HRGMv2_0326_15_20 21382 22113 + DNA_alkylation
CAZyme HRGMv2_0326_15 HRGMv2_0326_15_21 22325 23074 - GT2
TC HRGMv2_0326_15 HRGMv2_0326_15_22 23079 24548 - 2.A.66.2.23
pfam HRGMv2_0326_15 HRGMv2_0326_15_23 24606 26645 - tRNA-synt_1 | tRNA_bind | Anticodon_1 | tRNA-synt_1g | Anticodon_3
pfam HRGMv2_0326_15 HRGMv2_0326_15_24 26676 28184 - GH3 | GH3_M | GH3_C
TC HRGMv2_0326_15 HRGMv2_0326_15_25 28243 29607 - 3.A.18.1.1
Gene ID: HRGMv2_0326_15_16
Type: TC
Location: 16516 - 18393 (-)
Gene ID: HRGMv2_0326_15_17
Type: pfam
Location: 18397 - 18852 (-)
Gene ID: HRGMv2_0326_15_18
Type: TC
Location: 18971 - 20203 (-)
Gene ID: HRGMv2_0326_15_19
Type: pfam
Location: 20401 - 21369 (+)
Gene ID: HRGMv2_0326_15_20
Type: pfam
Location: 21382 - 22113 (+)
Gene ID: HRGMv2_0326_15_21
Type: CAZyme
Location: 22325 - 23074 (-)
Gene ID: HRGMv2_0326_15_22
Type: TC
Location: 23079 - 24548 (-)
Gene ID: HRGMv2_0326_15_23
Type: pfam
Location: 24606 - 26645 (-)
Gene ID: HRGMv2_0326_15_24
Type: pfam
Location: 26676 - 28184 (-)
Gene ID: HRGMv2_0326_15_25
Type: TC
Location: 28243 - 29607 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0326_15_17 vegetarian > vegan 1.07791 0.00536
HRGMv2_0326_15_18 vegetarian > omnivore 1.46028 0.04796

🧭 Explore Read Mapping of CGC

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