Cluster: HRGMv2_0326_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0326
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0326_10 | HRGMv2_0326_10_37 | 44519 | 45451 | + | GT2 |
| CAZyme | HRGMv2_0326_10 | HRGMv2_0326_10_38 | 45448 | 46416 | + | GT2 |
| pfam | HRGMv2_0326_10 | HRGMv2_0326_10_39 | 46456 | 47526 | - | LptF_LptG |
| pfam | HRGMv2_0326_10 | HRGMv2_0326_10_40 | 47544 | 48674 | - | TGT |
| TC | HRGMv2_0326_10 | HRGMv2_0326_10_41 | 48979 | 51567 | + | 3.A.9.1.2 |
| TC | HRGMv2_0326_10 | HRGMv2_0326_10_42 | 51718 | 52668 | + | 2.A.7.3.28 |
Gene ID: HRGMv2_0326_10_37
Type: CAZyme
Location: 44519 - 45451 (+)
Type: CAZyme
Location: 44519 - 45451 (+)
Gene ID: HRGMv2_0326_10_38
Type: CAZyme
Location: 45448 - 46416 (+)
Type: CAZyme
Location: 45448 - 46416 (+)
Gene ID: HRGMv2_0326_10_39
Type: pfam
Location: 46456 - 47526 (-)
Type: pfam
Location: 46456 - 47526 (-)
Gene ID: HRGMv2_0326_10_40
Type: pfam
Location: 47544 - 48674 (-)
Type: pfam
Location: 47544 - 48674 (-)
Gene ID: HRGMv2_0326_10_41
Type: TC
Location: 48979 - 51567 (+)
Type: TC
Location: 48979 - 51567 (+)
Gene ID: HRGMv2_0326_10_42
Type: TC
Location: 51718 - 52668 (+)
Type: TC
Location: 51718 - 52668 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma sp905210875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.