Cluster: HRGMv2_0325_CGC40
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_0325
- CGC Family ID: CGCFAM_02872
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0325_5 | HRGMv2_0325_5_78 | 88885 | 90570 | - | 3.A.1.120.6 |
| pfam | HRGMv2_0325_5 | HRGMv2_0325_5_79 | 90605 | 91168 | - | Pep_deformylase |
| pfam | HRGMv2_0325_5 | HRGMv2_0325_5_80 | 91165 | 91593 | - | RuvX |
| CAZyme | HRGMv2_0325_5 | HRGMv2_0325_5_81 | 91780 | 94911 | + | PL11_1 |
| CAZyme | HRGMv2_0325_5 | HRGMv2_0325_5_82 | 95055 | 98114 | + | PL11_1 |
| CAZyme | HRGMv2_0325_5 | HRGMv2_0325_5_83 | 98379 | 101441 | + | PL11_1 |
| CAZyme | HRGMv2_0325_5 | HRGMv2_0325_5_84 | 101825 | 104035 | - | GH3 |
| CAZyme | HRGMv2_0325_5 | HRGMv2_0325_5_85 | 104065 | 106938 | - | GH31_4 |
| pfam | HRGMv2_0325_5 | HRGMv2_0325_5_86 | 107212 | 107673 | + | SPOR |
| TC | HRGMv2_0325_5 | HRGMv2_0325_5_87 | 107751 | 109034 | + | 2.A.40.7.6 |
| pfam | HRGMv2_0325_5 | HRGMv2_0325_5_88 | 109046 | 109312 | + | Acetyltransf_1 | Acetyltransf_CG |
| CAZyme | HRGMv2_0325_5 | HRGMv2_0325_5_89 | 109367 | 112144 | + | CBM67 | GH78 |
| sulfatase | HRGMv2_0325_5 | HRGMv2_0325_5_90 | 112184 | 112828 | + | S1_14 |
| CAZyme | HRGMv2_0325_5 | HRGMv2_0325_5_91 | 112840 | 113907 | + | GH43_19 |
| TF | HRGMv2_0325_5 | HRGMv2_0325_5_92 | 113987 | 114883 | - | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_0325_5 | HRGMv2_0325_5_93 | 114912 | 115061 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0325_5 | HRGMv2_0325_5_94 | 115208 | 116281 | + | 2.A.6.2.28 |
| TC | HRGMv2_0325_5 | HRGMv2_0325_5_95 | 116297 | 119326 | + | 2.A.6.2.33 |
Gene ID: HRGMv2_0325_5_78
Type: TC
Location: 88885 - 90570 (-)
Type: TC
Location: 88885 - 90570 (-)
Gene ID: HRGMv2_0325_5_79
Type: pfam
Location: 90605 - 91168 (-)
Type: pfam
Location: 90605 - 91168 (-)
Gene ID: HRGMv2_0325_5_80
Type: pfam
Location: 91165 - 91593 (-)
Type: pfam
Location: 91165 - 91593 (-)
Gene ID: HRGMv2_0325_5_81
Type: CAZyme
Location: 91780 - 94911 (+)
Type: CAZyme
Location: 91780 - 94911 (+)
Gene ID: HRGMv2_0325_5_82
Type: CAZyme
Location: 95055 - 98114 (+)
Type: CAZyme
Location: 95055 - 98114 (+)
Gene ID: HRGMv2_0325_5_83
Type: CAZyme
Location: 98379 - 101441 (+)
Type: CAZyme
Location: 98379 - 101441 (+)
Gene ID: HRGMv2_0325_5_84
Type: CAZyme
Location: 101825 - 104035 (-)
Type: CAZyme
Location: 101825 - 104035 (-)
Gene ID: HRGMv2_0325_5_85
Type: CAZyme
Location: 104065 - 106938 (-)
Type: CAZyme
Location: 104065 - 106938 (-)
Gene ID: HRGMv2_0325_5_86
Type: pfam
Location: 107212 - 107673 (+)
Type: pfam
Location: 107212 - 107673 (+)
Gene ID: HRGMv2_0325_5_87
Type: TC
Location: 107751 - 109034 (+)
Type: TC
Location: 107751 - 109034 (+)
Gene ID: HRGMv2_0325_5_88
Type: pfam
Location: 109046 - 109312 (+)
Type: pfam
Location: 109046 - 109312 (+)
Gene ID: HRGMv2_0325_5_89
Type: CAZyme
Location: 109367 - 112144 (+)
Type: CAZyme
Location: 109367 - 112144 (+)
Gene ID: HRGMv2_0325_5_90
Type: sulfatase
Location: 112184 - 112828 (+)
Type: sulfatase
Location: 112184 - 112828 (+)
Gene ID: HRGMv2_0325_5_91
Type: CAZyme
Location: 112840 - 113907 (+)
Type: CAZyme
Location: 112840 - 113907 (+)
Gene ID: HRGMv2_0325_5_92
Type: TF
Location: 113987 - 114883 (-)
Type: TF
Location: 113987 - 114883 (-)
Gene ID: HRGMv2_0325_5_93
Type:
Location: 114912 - 115061 (+)
Type:
Location: 114912 - 115061 (+)
Gene ID: HRGMv2_0325_5_94
Type: TC
Location: 115208 - 116281 (+)
Type: TC
Location: 115208 - 116281 (+)
Gene ID: HRGMv2_0325_5_95
Type: TC
Location: 116297 - 119326 (+)
Type: TC
Location: 116297 - 119326 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma sp944325415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.