dbCAN HGM

Cluster: HRGMv2_0325_CGC39

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_0325_4	HRGMv2_0325_4_241	317050	318318	-	3.D.5.1.1
TC	HRGMv2_0325_4	HRGMv2_0325_4_242	318332	318946	-	3.D.5.1.1
TC	HRGMv2_0325_4	HRGMv2_0325_4_243	318972	319598	-	3.D.5.1.1
pfam	HRGMv2_0325_4	HRGMv2_0325_4_244	319617	320318	-	FMN_bind
TC	HRGMv2_0325_4	HRGMv2_0325_4_245	320331	321539	-	3.D.5.1.1
TC	HRGMv2_0325_4	HRGMv2_0325_4_246	321566	322912	-	3.D.5.1.1
NULL(UNKNOWN)	HRGMv2_0325_4	HRGMv2_0325_4_247	323124	323591	+	NULL(UNKNOWN) [View Structural Homologs]
pfam	HRGMv2_0325_4	HRGMv2_0325_4_248	323686	324876	+	HlyD_3 \| HlyD_D23
TC	HRGMv2_0325_4	HRGMv2_0325_4_249	324889	327984	+	2.A.6.1.5
pfam	HRGMv2_0325_4	HRGMv2_0325_4_250	327977	329152	+	OEP \| OEP
TC	HRGMv2_0325_4	HRGMv2_0325_4_251	329513	330640	+	3.A.1.13.2
TC	HRGMv2_0325_4	HRGMv2_0325_4_252	330637	331662	+	3.A.1.13.2
TC	HRGMv2_0325_4	HRGMv2_0325_4_253	331662	332717	+	3.A.1.13.2
CAZyme	HRGMv2_0325_4	HRGMv2_0325_4_254	332714	333853	-	GT19

Gene ID: HRGMv2_0325_4_241
Type: TC
Location: 317050 - 318318 (-)

Gene ID: HRGMv2_0325_4_242
Type: TC
Location: 318332 - 318946 (-)

Gene ID: HRGMv2_0325_4_243
Type: TC
Location: 318972 - 319598 (-)

Gene ID: HRGMv2_0325_4_244
Type: pfam
Location: 319617 - 320318 (-)

Gene ID: HRGMv2_0325_4_245
Type: TC
Location: 320331 - 321539 (-)

Gene ID: HRGMv2_0325_4_246
Type: TC
Location: 321566 - 322912 (-)

Gene ID: HRGMv2_0325_4_247
Type:
Location: 323124 - 323591 (+)

Gene ID: HRGMv2_0325_4_248
Type: pfam
Location: 323686 - 324876 (+)

Gene ID: HRGMv2_0325_4_249
Type: TC
Location: 324889 - 327984 (+)

Gene ID: HRGMv2_0325_4_250
Type: pfam
Location: 327977 - 329152 (+)

Gene ID: HRGMv2_0325_4_251
Type: TC
Location: 329513 - 330640 (+)

Gene ID: HRGMv2_0325_4_252
Type: TC
Location: 330637 - 331662 (+)

Gene ID: HRGMv2_0325_4_253
Type: TC
Location: 331662 - 332717 (+)

Gene ID: HRGMv2_0325_4_254
Type: CAZyme
Location: 332714 - 333853 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_0325_4_241	vegetarian > vegan	2.40954	0.00565
HRGMv2_0325_4_243	vegetarian > vegan	3.21010	0.00565
HRGMv2_0325_4_244	vegetarian > vegan	2.53963	0.00565
HRGMv2_0325_4_249	vegetarian > vegan	2.31291	0.00565