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Cluster: HRGMv2_0325_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0325_3 HRGMv2_0325_3_162 205068 206225 - 3.B.1.1.2
pfam HRGMv2_0325_3 HRGMv2_0325_3_163 206231 206662 - Biotin_lipoyl | Biotin_lipoyl_2
pfam HRGMv2_0325_3 HRGMv2_0325_3_164 206675 207568 - LTD | OAD_gamma
TC HRGMv2_0325_3 HRGMv2_0325_3_165 207592 209145 - 3.B.1.1.2
STP HRGMv2_0325_3 HRGMv2_0325_3_166 209163 209576 - Glyoxalase
TC HRGMv2_0325_3 HRGMv2_0325_3_167 210018 211928 + 1.A.33.1.2
CAZyme HRGMv2_0325_3 HRGMv2_0325_3_168 212171 213742 - CE8
pfam HRGMv2_0325_3 HRGMv2_0325_3_169 214048 215049 + 2-Hacid_dh | 2-Hacid_dh_C | NAD_binding_2
TC HRGMv2_0325_3 HRGMv2_0325_3_170 215064 216359 + 2.A.35.1.5
Gene ID: HRGMv2_0325_3_162
Type: TC
Location: 205068 - 206225 (-)
Gene ID: HRGMv2_0325_3_163
Type: pfam
Location: 206231 - 206662 (-)
Gene ID: HRGMv2_0325_3_164
Type: pfam
Location: 206675 - 207568 (-)
Gene ID: HRGMv2_0325_3_165
Type: TC
Location: 207592 - 209145 (-)
Gene ID: HRGMv2_0325_3_166
Type: STP
Location: 209163 - 209576 (-)
Gene ID: HRGMv2_0325_3_167
Type: TC
Location: 210018 - 211928 (+)
Gene ID: HRGMv2_0325_3_168
Type: CAZyme
Location: 212171 - 213742 (-)
Gene ID: HRGMv2_0325_3_169
Type: pfam
Location: 214048 - 215049 (+)
Gene ID: HRGMv2_0325_3_170
Type: TC
Location: 215064 - 216359 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0325_3_163 vegetarian > vegan 3.65045 0.00565
HRGMv2_0325_3_166 vegetarian > vegan 2.53520 0.00565

🧭 Explore Read Mapping of CGC

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