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Cluster: HRGMv2_0325_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0325_1 HRGMv2_0325_1_87 111474 114062 + GH3
TF HRGMv2_0325_1 HRGMv2_0325_1_88 114151 115128 - HTH_AraC
NULL(UNKNOWN) HRGMv2_0325_1 HRGMv2_0325_1_89 115304 115396 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0325_1 HRGMv2_0325_1_90 115476 116510 + 2.A.6.2.44
TC HRGMv2_0325_1 HRGMv2_0325_1_91 116521 119613 + 2.A.6.2.17
pfam HRGMv2_0325_1 HRGMv2_0325_1_92 119629 120915 + OEP | OEP
STP HRGMv2_0325_1 HRGMv2_0325_1_93 121008 122795 - AAA
CAZyme HRGMv2_0325_1 HRGMv2_0325_1_94 123089 124831 + GH10
Gene ID: HRGMv2_0325_1_87
Type: CAZyme
Location: 111474 - 114062 (+)
Gene ID: HRGMv2_0325_1_88
Type: TF
Location: 114151 - 115128 (-)
Gene ID: HRGMv2_0325_1_89
Type:
Location: 115304 - 115396 (+)
Gene ID: HRGMv2_0325_1_90
Type: TC
Location: 115476 - 116510 (+)
Gene ID: HRGMv2_0325_1_91
Type: TC
Location: 116521 - 119613 (+)
Gene ID: HRGMv2_0325_1_92
Type: pfam
Location: 119629 - 120915 (+)
Gene ID: HRGMv2_0325_1_93
Type: STP
Location: 121008 - 122795 (-)
Gene ID: HRGMv2_0325_1_94
Type: CAZyme
Location: 123089 - 124831 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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