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Cluster: HRGMv2_0325_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0325_1 HRGMv2_0325_1_50 67388 67780 + 9.B.124.1.3
pfam HRGMv2_0325_1 HRGMv2_0325_1_51 67873 69969 - DEAD | Helicase_C | ResIII | RecG_wedge | RecG_dom3_C
pfam HRGMv2_0325_1 HRGMv2_0325_1_52 69962 70639 - IspD | NTP_transf_3
CAZyme HRGMv2_0325_1 HRGMv2_0325_1_53 70929 71846 + CBM50
pfam HRGMv2_0325_1 HRGMv2_0325_1_54 71899 75117 + MGS | ATP-grasp | ATP-grasp | CPSase_L_D2 | CPSase_L_D2 | CPSase_L_D3 | Dala_Dala_lig_C | Dala_Dala_lig_C
NULL(UNKNOWN) HRGMv2_0325_1 HRGMv2_0325_1_55 75147 75389 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0325_1 HRGMv2_0325_1_56 75449 77650 + 3.A.10.1.10
Gene ID: HRGMv2_0325_1_50
Type: TC
Location: 67388 - 67780 (+)
Gene ID: HRGMv2_0325_1_51
Type: pfam
Location: 67873 - 69969 (-)
Gene ID: HRGMv2_0325_1_52
Type: pfam
Location: 69962 - 70639 (-)
Gene ID: HRGMv2_0325_1_53
Type: CAZyme
Location: 70929 - 71846 (+)
Gene ID: HRGMv2_0325_1_54
Type: pfam
Location: 71899 - 75117 (+)
Gene ID: HRGMv2_0325_1_55
Type:
Location: 75147 - 75389 (+)
Gene ID: HRGMv2_0325_1_56
Type: TC
Location: 75449 - 77650 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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