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Cluster: HRGMv2_0317_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0317_8 HRGMv2_0317_8_3 3909 7163 - 1.B.14.6.1
TC HRGMv2_0317_8 HRGMv2_0317_8_4 8206 11466 + 1.B.14.6.1
TC HRGMv2_0317_8 HRGMv2_0317_8_5 11576 13612 + 8.A.46.1.2
pfam HRGMv2_0317_8 HRGMv2_0317_8_6 13639 15297 + DUF4957 | DUF5123
CAZyme HRGMv2_0317_8 HRGMv2_0317_8_7 15890 18463 - GH3
pfam HRGMv2_0317_8 HRGMv2_0317_8_8 18485 18718 - DUF2442
pfam HRGMv2_0317_8 HRGMv2_0317_8_9 18936 20345 - Fn3_assoc | CHB_HEX_C_1
CAZyme HRGMv2_0317_8 HRGMv2_0317_8_10 21229 23808 - GH105 | GH28
TF HRGMv2_0317_8 HRGMv2_0317_8_11 24381 25322 - GerE
CAZyme HRGMv2_0317_8 HRGMv2_0317_8_12 25976 27325 + CBM50
pfam HRGMv2_0317_8 HRGMv2_0317_8_13 27343 28095 + OMP_b-brl_2
TC HRGMv2_0317_8 HRGMv2_0317_8_14 28151 29830 + 2.A.17.4.5
TF HRGMv2_0317_8 HRGMv2_0317_8_15 30085 30672 - GerE
TC HRGMv2_0317_8 HRGMv2_0317_8_16 30781 31938 - 3.B.1.1.2
pfam HRGMv2_0317_8 HRGMv2_0317_8_17 32076 32519 - Biotin_lipoyl | Biotin_lipoyl_2
pfam HRGMv2_0317_8 HRGMv2_0317_8_18 32577 33542 - OAD_gamma
TC HRGMv2_0317_8 HRGMv2_0317_8_19 33682 35370 - 2.A.81.1.2
pfam HRGMv2_0317_8 HRGMv2_0317_8_20 35793 37655 + MM_CoA_mutase
STP HRGMv2_0317_8 HRGMv2_0317_8_21 37652 39796 + B12-binding
CAZyme HRGMv2_0317_8 HRGMv2_0317_8_22 40306 41979 + GT3
CAZyme HRGMv2_0317_8 HRGMv2_0317_8_23 42045 44600 + GT35
Gene ID: HRGMv2_0317_8_3
Type: TC
Location: 3909 - 7163 (-)
Gene ID: HRGMv2_0317_8_4
Type: TC
Location: 8206 - 11466 (+)
Gene ID: HRGMv2_0317_8_5
Type: TC
Location: 11576 - 13612 (+)
Gene ID: HRGMv2_0317_8_6
Type: pfam
Location: 13639 - 15297 (+)
Gene ID: HRGMv2_0317_8_7
Type: CAZyme
Location: 15890 - 18463 (-)
Gene ID: HRGMv2_0317_8_8
Type: pfam
Location: 18485 - 18718 (-)
Gene ID: HRGMv2_0317_8_9
Type: pfam
Location: 18936 - 20345 (-)
Gene ID: HRGMv2_0317_8_10
Type: CAZyme
Location: 21229 - 23808 (-)
Gene ID: HRGMv2_0317_8_11
Type: TF
Location: 24381 - 25322 (-)
Gene ID: HRGMv2_0317_8_12
Type: CAZyme
Location: 25976 - 27325 (+)
Gene ID: HRGMv2_0317_8_13
Type: pfam
Location: 27343 - 28095 (+)
Gene ID: HRGMv2_0317_8_14
Type: TC
Location: 28151 - 29830 (+)
Gene ID: HRGMv2_0317_8_15
Type: TF
Location: 30085 - 30672 (-)
Gene ID: HRGMv2_0317_8_16
Type: TC
Location: 30781 - 31938 (-)
Gene ID: HRGMv2_0317_8_17
Type: pfam
Location: 32076 - 32519 (-)
Gene ID: HRGMv2_0317_8_18
Type: pfam
Location: 32577 - 33542 (-)
Gene ID: HRGMv2_0317_8_19
Type: TC
Location: 33682 - 35370 (-)
Gene ID: HRGMv2_0317_8_20
Type: pfam
Location: 35793 - 37655 (+)
Gene ID: HRGMv2_0317_8_21
Type: STP
Location: 37652 - 39796 (+)
Gene ID: HRGMv2_0317_8_22
Type: CAZyme
Location: 40306 - 41979 (+)
Gene ID: HRGMv2_0317_8_23
Type: CAZyme
Location: 42045 - 44600 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0317_8_17 vegetarian > vegan 1.19779 0.01689

🧭 Explore Read Mapping of CGC

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