Cluster: HRGMv2_0317_CGC13
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_0317
- CGC Family ID: CGCFAM_00217
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0317_6 | HRGMv2_0317_6_25 | 31629 | 33551 | - | GH43_19 | GH43_34 |
| CAZyme | HRGMv2_0317_6 | HRGMv2_0317_6_26 | 33552 | 35966 | - | GH35 |
| CAZyme | HRGMv2_0317_6 | HRGMv2_0317_6_27 | 36278 | 37405 | - | GH43_24 |
| pfam | HRGMv2_0317_6 | HRGMv2_0317_6_28 | 37540 | 39540 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0317_6 | HRGMv2_0317_6_29 | 39674 | 42988 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0317_6 | HRGMv2_0317_6_30 | 43059 | 44177 | - | GH105 |
| CAZyme | HRGMv2_0317_6 | HRGMv2_0317_6_31 | 44211 | 44882 | - | PL42 |
| CAZyme | HRGMv2_0317_6 | HRGMv2_0317_6_32 | 44976 | 46223 | - | GH154 |
| CAZyme | HRGMv2_0317_6 | HRGMv2_0317_6_33 | 46402 | 47250 | - | GH16_3 |
| TF | HRGMv2_0317_6 | HRGMv2_0317_6_34 | 47945 | 51916 | + | HTH_AraC |
| CAZyme | HRGMv2_0317_6 | HRGMv2_0317_6_35 | 52058 | 55198 | + | GH2 |
| STP | HRGMv2_0317_6 | HRGMv2_0317_6_36 | 55741 | 57087 | - | Pyr_redox_2 |
| TC | HRGMv2_0317_6 | HRGMv2_0317_6_37 | 57205 | 58617 | + | 9.B.18.1.1 |
| CAZyme | HRGMv2_0317_6 | HRGMv2_0317_6_38 | 58747 | 60165 | - | GH28 |
| NULL(UNKNOWN) | HRGMv2_0317_6 | HRGMv2_0317_6_39 | 60735 | 60959 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0317_6 | HRGMv2_0317_6_40 | 60963 | 62099 | - | GT4 |
Gene ID: HRGMv2_0317_6_25
Type: CAZyme
Location: 31629 - 33551 (-)
Type: CAZyme
Location: 31629 - 33551 (-)
Gene ID: HRGMv2_0317_6_26
Type: CAZyme
Location: 33552 - 35966 (-)
Type: CAZyme
Location: 33552 - 35966 (-)
Gene ID: HRGMv2_0317_6_27
Type: CAZyme
Location: 36278 - 37405 (-)
Type: CAZyme
Location: 36278 - 37405 (-)
Gene ID: HRGMv2_0317_6_28
Type: pfam
Location: 37540 - 39540 (-)
Type: pfam
Location: 37540 - 39540 (-)
Gene ID: HRGMv2_0317_6_29
Type: TC
Location: 39674 - 42988 (-)
Type: TC
Location: 39674 - 42988 (-)
Gene ID: HRGMv2_0317_6_30
Type: CAZyme
Location: 43059 - 44177 (-)
Type: CAZyme
Location: 43059 - 44177 (-)
Gene ID: HRGMv2_0317_6_31
Type: CAZyme
Location: 44211 - 44882 (-)
Type: CAZyme
Location: 44211 - 44882 (-)
Gene ID: HRGMv2_0317_6_32
Type: CAZyme
Location: 44976 - 46223 (-)
Type: CAZyme
Location: 44976 - 46223 (-)
Gene ID: HRGMv2_0317_6_33
Type: CAZyme
Location: 46402 - 47250 (-)
Type: CAZyme
Location: 46402 - 47250 (-)
Gene ID: HRGMv2_0317_6_34
Type: TF
Location: 47945 - 51916 (+)
Type: TF
Location: 47945 - 51916 (+)
Gene ID: HRGMv2_0317_6_35
Type: CAZyme
Location: 52058 - 55198 (+)
Type: CAZyme
Location: 52058 - 55198 (+)
Gene ID: HRGMv2_0317_6_36
Type: STP
Location: 55741 - 57087 (-)
Type: STP
Location: 55741 - 57087 (-)
Gene ID: HRGMv2_0317_6_37
Type: TC
Location: 57205 - 58617 (+)
Type: TC
Location: 57205 - 58617 (+)
Gene ID: HRGMv2_0317_6_38
Type: CAZyme
Location: 58747 - 60165 (-)
Type: CAZyme
Location: 58747 - 60165 (-)
Gene ID: HRGMv2_0317_6_39
Type:
Location: 60735 - 60959 (+)
Type:
Location: 60735 - 60959 (+)
Gene ID: HRGMv2_0317_6_40
Type: CAZyme
Location: 60963 - 62099 (-)
Type: CAZyme
Location: 60963 - 62099 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.