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Cluster: HRGMv2_0317_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0317_4 HRGMv2_0317_4_65 83817 85136 + GH5_7
NULL(UNKNOWN) HRGMv2_0317_4 HRGMv2_0317_4_66 85288 85377 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0317_4 HRGMv2_0317_4_67 85490 87808 - GH3
CAZyme HRGMv2_0317_4 HRGMv2_0317_4_68 88021 89109 - CE2
pfam HRGMv2_0317_4 HRGMv2_0317_4_69 89156 90349 - GlcNAc_2-epim
TC HRGMv2_0317_4 HRGMv2_0317_4_70 90339 91733 - 2.A.2.3.6
CAZyme HRGMv2_0317_4 HRGMv2_0317_4_71 91816 92994 - GH130_1
CAZyme HRGMv2_0317_4 HRGMv2_0317_4_72 93016 94173 - GH26
CAZyme HRGMv2_0317_4 HRGMv2_0317_4_73 94737 98930 + CE7 | CE7
TF HRGMv2_0317_4 HRGMv2_0317_4_74 99326 100219 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_0317_4 HRGMv2_0317_4_75 100710 102920 + GH36
Gene ID: HRGMv2_0317_4_65
Type: CAZyme
Location: 83817 - 85136 (+)
Gene ID: HRGMv2_0317_4_66
Type:
Location: 85288 - 85377 (+)
Gene ID: HRGMv2_0317_4_67
Type: CAZyme
Location: 85490 - 87808 (-)
Gene ID: HRGMv2_0317_4_68
Type: CAZyme
Location: 88021 - 89109 (-)
Gene ID: HRGMv2_0317_4_69
Type: pfam
Location: 89156 - 90349 (-)
Gene ID: HRGMv2_0317_4_70
Type: TC
Location: 90339 - 91733 (-)
Gene ID: HRGMv2_0317_4_71
Type: CAZyme
Location: 91816 - 92994 (-)
Gene ID: HRGMv2_0317_4_72
Type: CAZyme
Location: 93016 - 94173 (-)
Gene ID: HRGMv2_0317_4_73
Type: CAZyme
Location: 94737 - 98930 (+)
Gene ID: HRGMv2_0317_4_74
Type: TF
Location: 99326 - 100219 (-)
Gene ID: HRGMv2_0317_4_75
Type: CAZyme
Location: 100710 - 102920 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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