Cluster: HRGMv2_0310_CGC8
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0310
- CGC Family ID: CGCFAM_01250
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0310_4 | HRGMv2_0310_4_49 | 72521 | 74122 | - | GH16_3 |
| NULL(UNKNOWN) | HRGMv2_0310_4 | HRGMv2_0310_4_50 | 74193 | 75002 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0310_4 | HRGMv2_0310_4_51 | 75115 | 77220 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0310_4 | HRGMv2_0310_4_52 | 77236 | 80526 | - | 1.B.14.6.1 |
| STP | HRGMv2_0310_4 | HRGMv2_0310_4_53 | 81112 | 84792 | + | HATPase_c | HisKA | Response_reg | Y_Y_Y |
| TF | HRGMv2_0310_4 | HRGMv2_0310_4_54 | 84764 | 85216 | + | HTH_AraC |
| CAZyme | HRGMv2_0310_4 | HRGMv2_0310_4_55 | 85269 | 87578 | + | GH105 | GH154 |
| CAZyme | HRGMv2_0310_4 | HRGMv2_0310_4_56 | 87660 | 89231 | + | CBM32 | GH43_24 |
| CAZyme | HRGMv2_0310_4 | HRGMv2_0310_4_57 | 89289 | 90905 | - | CE20 | CE20 |
| STP | HRGMv2_0310_4 | HRGMv2_0310_4_58 | 91227 | 91739 | + | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | HRGMv2_0310_4 | HRGMv2_0310_4_59 | 91810 | 93405 | + | GH43_35 |
| CAZyme | HRGMv2_0310_4 | HRGMv2_0310_4_60 | 93433 | 95880 | + | GH95 |
Gene ID: HRGMv2_0310_4_49
Type: CAZyme
Location: 72521 - 74122 (-)
Type: CAZyme
Location: 72521 - 74122 (-)
Gene ID: HRGMv2_0310_4_50
Type:
Location: 74193 - 75002 (-)
Type:
Location: 74193 - 75002 (-)
Gene ID: HRGMv2_0310_4_51
Type: pfam
Location: 75115 - 77220 (-)
Type: pfam
Location: 75115 - 77220 (-)
Gene ID: HRGMv2_0310_4_52
Type: TC
Location: 77236 - 80526 (-)
Type: TC
Location: 77236 - 80526 (-)
Gene ID: HRGMv2_0310_4_53
Type: STP
Location: 81112 - 84792 (+)
Type: STP
Location: 81112 - 84792 (+)
Gene ID: HRGMv2_0310_4_54
Type: TF
Location: 84764 - 85216 (+)
Type: TF
Location: 84764 - 85216 (+)
Gene ID: HRGMv2_0310_4_55
Type: CAZyme
Location: 85269 - 87578 (+)
Type: CAZyme
Location: 85269 - 87578 (+)
Gene ID: HRGMv2_0310_4_56
Type: CAZyme
Location: 87660 - 89231 (+)
Type: CAZyme
Location: 87660 - 89231 (+)
Gene ID: HRGMv2_0310_4_57
Type: CAZyme
Location: 89289 - 90905 (-)
Type: CAZyme
Location: 89289 - 90905 (-)
Gene ID: HRGMv2_0310_4_58
Type: STP
Location: 91227 - 91739 (+)
Type: STP
Location: 91227 - 91739 (+)
Gene ID: HRGMv2_0310_4_59
Type: CAZyme
Location: 91810 - 93405 (+)
Type: CAZyme
Location: 91810 - 93405 (+)
Gene ID: HRGMv2_0310_4_60
Type: CAZyme
Location: 93433 - 95880 (+)
Type: CAZyme
Location: 93433 - 95880 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.